Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05214 ATGGCACCAAAGAAAAGCCTTATCGACAAAGAAAGAAGAGTCTTCACCGAAGAAGACGATCTTACCATTTTAAAATCTATTCCGAAGTTTATGTCAGAAACCGGAGAGACTCCCTATTCTACTGATTTTCACACTTTTGTGAAAAATAAGATTCGTGGTAAGATCACTGTGAAACAGCTGAACAGGAAGATTCGCGGTTTCAAGGGAAAGTATGGAAAAGAAGGTGAAACATTCACCAAAACTCATGAAAAGAACTCGAGAACTCGCTTGATTAGGATCTATCTTCTGGCTTAG 294 0.3878 MAPKKSLIDKERRVFTEEDDLTILKSIPKFMSETGETPYSTDFHTFVKNKIRGKITVKQLNRKIRGFKGKYGKEGETFTKTHEKNSRTRLIRIYLLA 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05214 97 Pfam Protein of unknown function, DUF573 12 84 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05214 Trre-Chr2 59192471 59192764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05214 12 84 GeBP Transcription Factor Family AT1G61730 35.443 9.76e-10 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre2g05214 DUF573 1.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05214 - K01649 cam:101512869 58.9214