Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05211 ATGGTTAACTCCACAAAACACATGAATTTGAGTCTCATCATCATCTTCTTCATCCTCCTTGTTACCAATGATACTGTAAAATCACAATCAACAATACAACCAGAATCTCCTTTGGCATCACCAACAATCTTATGGGATGTGTCTTCTATTGCTGTAATTGTTGGAGCAATCATTGCCACACTCATCTTAATTTTCATCCTTTCATTGTTCCTGCGCCGCATCACAAACCCATCAATGGCAGAGTTATCAAAACGTGAACTTAGCATTGGTATCAACCCTCAAATTCTCAAAAGTTTCCCAATTTTATTATACTCTTCCATCATCAACCATCTTAAGGAAAGGGAAACTGAAGCTCCTCTACAATGTGCTGTTTGTCTTGCTGATTTCAACAACAATGATACAATTCGTATGTTACCTCAATGTAACCATTTTTTTCATCCACCATGTATTGATGCTTGGCTTTCTAACCATCCTACTTGTCCTGTTTGTCGTACCAATCTCAATCTCAATCATCAATGTTCATGTCATTTCGCCATTTCTATTGACACACAAGTCAACGGTGAACGTCGAAATGAAAGCGTATAA 585 0.3761 MVNSTKHMNLSLIIIFFILLVTNDTVKSQSTIQPESPLASPTILWDVSSIAVIVGAIIATLILIFILSLFLRRITNPSMAELSKRELSIGINPQILKSFPILLYSSIINHLKERETEAPLQCAVCLADFNNNDTIRMLPQCNHFFHPPCIDAWLSNHPTCPVCRTNLNLNHQCSCHFAISIDTQVNGERRNESV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05211 194 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 174 - -
Trre2g05211 194 FunFam E3 ubiquitin-protein ligase ATL6 79 170 - -
Trre2g05211 194 Pfam Ring finger domain 121 164 IPR001841 -
Trre2g05211 194 SUPERFAMILY RING/U-box 121 170 - -
Trre2g05211 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 170 IPR013083 -
Trre2g05211 194 SMART ring_2 122 163 IPR001841 -
Trre2g05211 194 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Trre2g05211 194 CDD RING-H2_EL5-like 121 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05211 Trre-Chr2 59181448 59182032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05211 2 167 Rapid Response to Elicitors AT3G05200 35.196 1.49e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05211 K10664 - aprc:113871817 128.257