Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05203 ATGGGGTTCCAACAATTAGAAAAGACAAAACCAAAACATAGGAAGGGTTTATGGTCCCCTGAAGAAGATCATAATCTTAGAAACTACATCCTTAAACATGGTCATGGATGCTGGAGCTCTGTCCCAATTAAAGCAGGCTTGCAAAGGAATGGAAAGAGTTGCAGATTAAGGTGGATTAATTATCTAAGGCCAGGATTAAAGAGAGGGAAGTTCAGCAAACAGGAGGAGGAGACAATCCTGACCCTTCATCACATCTTAGGCAACAAGTGGTCACAAATAGCACAACATTTACCAGGAAGGACAGACAATGAGATAAAAAATTATTGGCATTCATATTTGAAAAAGAAACTGGCCAAAGCTATGGAAATGGAATCTCATAAACAAATTCATCATGCTAGCTCAAGCTCAGATACATTGAATTCTTCACCCTCTCTTCAAAATCATGCAACTCAAGATCCACAAAATTACAACATTACCAAAGAGATTCATCAAAGTTCCTTACCAAAATTGTTGTTTGCTGAATGGCTTTCACTTGATCAAGTAAATGGTAGGAACTCTACAAATAATTCAGTTGATTCTTTGGTCATGAAAAATGGATTTGATCAAAATTCAGCTTTTCAAGTAGGTACATTGCAAGAGGGACCCTTCAATGGAGAGTATCATCATAGTATGTTCAATTCACATGTTAAATTTCCAAATCAAATGGTGGGAAATGGATTTGTCCATTGCATACCTGAGGTTGATTTAAGTAATAATTTCAATCTAAGCAATGATGCAATGTATGCATGA 789 0.365 MGFQQLEKTKPKHRKGLWSPEEDHNLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHILGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKLAKAMEMESHKQIHHASSSSDTLNSSPSLQNHATQDPQNYNITKEIHQSSLPKLLFAEWLSLDQVNGRNSTNNSVDSLVMKNGFDQNSAFQVGTLQEGPFNGEYHHSMFNSHVKFPNQMVGNGFVHCIPEVDLSNNFNLSNDAMYA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05203 262 SMART sant 67 115 IPR001005 -
Trre2g05203 262 SMART sant 14 64 IPR001005 -
Trre2g05203 262 Gene3D - 15 67 - -
Trre2g05203 262 FunFam MYB transcription factor 70 141 - -
Trre2g05203 262 CDD SANT 18 62 IPR001005 -
Trre2g05203 262 Gene3D - 69 141 - -
Trre2g05203 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Trre2g05203 262 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Trre2g05203 262 MobiDBLite consensus disorder prediction 123 153 - -
Trre2g05203 262 PANTHER MYB DOMAIN PROTEIN 55 6 209 - -
Trre2g05203 262 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Trre2g05203 262 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Trre2g05203 262 MobiDBLite consensus disorder prediction 132 153 - -
Trre2g05203 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre2g05203 262 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre2g05203 262 FunFam MYB transcription factor 12 68 - -
Trre2g05203 262 CDD SANT 70 113 IPR001005 -
Trre2g05203 262 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05203 Trre-Chr2 59119763 59121627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05203 8 176 MYB Transcription Factor Family AT3G48920 55.814 3.63e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g05203 Myb_DNA-binding 3.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05203 K09422 - gmx:778167 403.29