Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05197 ATGGGTAAAACACCTTGTTGTGAGAAACATGGTGTTAGAAGAGGAGCTTGGACTCCTGAAGAAGACCAAGCTTTAGTTGATTACATCAACAAACATGGCCATGGAAGTTGGCGTACACTCCCTAAACATGCAGGTCTCACACGATGTGGTAAAAGTTGTCGACTTCGGTGGATAAACTATCTTCGTCCTGGCATCAAGCGTGGCTCATTTACTAGTGAAGAAGAAACAACTATTATTCAACTTCATGCCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAACTACAAGGAAGAACAGACAACGAGATTAAGAACTATTGGAACACTCATCTAAAGAAGCGCGTCCTTCAATCACTAGAGGAAAAAAAACATTCATGTCTCATTCCTGATAAGAATGTTCAGTCTAATTCTCCTTCTACACGCCACATGGTACAGTGGGAAAGTGCAAGAGTTGAGGCAGAAACAAGGTTGTCAATGGAATCCACATTGCTTAATTCAGAATCCACGGCAAAAACAAGCCCTGATTACTTTCTTCAACTTTGGCATTCTGAGGTTGGACAGTCGTTTCGCAAGATCAAAGGAAAGGAAGAAGCATCATCATCTTCGCTATCATCATCAAAATTGGAGGAGTCATGTTCAAATGTCTCATTGCAAGTGAAAAACATCGGAACACAAAGCTTGAAAGTATCAACACCAAAGCTCGAAGATGTCAACACAACTCAGGAACAAAAAGCAAGTAGCTACAGACCAAAGCTTGAATATGATAGAGCTGGTTCAGATTCAGGCAATTATGAATTTCTTGATACTTCTGATTCTGCACTAAAGCACCTGTTACATATGCCTGATGATGATATAGGATTCTTGGGACAAACTGACAATTTCTTGAATCTCCTTGATGCTAGATGTGATTAA 915 0.4077 MGKTPCCEKHGVRRGAWTPEEDQALVDYINKHGHGSWRTLPKHAGLTRCGKSCRLRWINYLRPGIKRGSFTSEEETTIIQLHAMLGNRWAAIASQLQGRTDNEIKNYWNTHLKKRVLQSLEEKKHSCLIPDKNVQSNSPSTRHMVQWESARVEAETRLSMESTLLNSESTAKTSPDYFLQLWHSEVGQSFRKIKGKEEASSSSLSSSKLEESCSNVSLQVKNIGTQSLKVSTPKLEDVNTTQEQKASSYRPKLEYDRAGSDSGNYEFLDTSDSALKHLLHMPDDDIGFLGQTDNFLNLLDARCD 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05197 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trre2g05197 304 CDD SANT 69 112 IPR001005 -
Trre2g05197 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre2g05197 304 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre2g05197 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 239 - -
Trre2g05197 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre2g05197 304 CDD SANT 16 61 IPR001005 -
Trre2g05197 304 Gene3D - 68 143 - -
Trre2g05197 304 SMART sant 66 114 IPR001005 -
Trre2g05197 304 SMART sant 13 63 IPR001005 -
Trre2g05197 304 FunFam MYB-related transcription factor 13 66 - -
Trre2g05197 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Trre2g05197 304 Gene3D - 14 66 - -
Trre2g05197 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre2g05197 304 FunFam MYB transcription factor 69 116 - -
Trre2g05197 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05197 Trre-Chr2 59062924 59065073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05197 1 289 MYB Transcription Factor Family AT3G61250 51.342 4.39e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g05197 Myb_DNA-binding 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05197 K09422 - gmx:100782075 459.529