Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05170 ATGGCTTCTACTTCAAGAAGATTACCAACACCTCAAGAAAGAGAAAAGTGGAAGCACTTTTTTGACACTATCATAGATCCAAATTTGGCACCAATAGAAATCCCTCAACCTTTTTTCCACAGAATGAAAGAGAATACTTTTTGGATGAGAATTTACCCTCCACTTCAACCTGTGAAAACTGAATTTCCACCTCAGGCAACTTTGAAAAGGAAGCATCAAAAGGAAATATTCAGCAATAATGATGATCAAGATGAGCCAAATTCCAATAGGTGCAAGAGACCTAAAGGCAGCAAACAAACTATGTATTTGAAGTCCCCCCGTCCATGTCAAAAACAGAACATTCTGAAGTCTATCCCAAAGGAATTAAGCAGACGACGACACCCAAATTTGAAGATTCGTGCATCTCAGGAAAAAAAAAATTTGAAATCCACACCAAAGAAATCAAACAAACACCATCAGTATAAGCATTCAAGGGGACCAGCCATTGTTAAGTTGAATCCTGATGGAAGTTATGGTTGGGAGAAGATTGTAACTAGAGCTGGTGCAGCCCATACAAGACCTCAAGTCATGCATTTTCCTAAGCAATTTTCGAGATTATTTTTGGGAAAAAAACAAAACATAATGTTGGTCCAAGCTGAGGCAGGAGATACATTCTCTTGCAAGATTAAGACAGCAGCAAGGAATAGAGATGAAAAATACATAACAAAAGAGTGGACCAAATTTGTGAGAAGAAACAACCTCCAGGTTGGAGACAAGCTCATTTTCACTCTTCAGAACCAACCAACAAAGCTCCTGATTCAGATCATCCGTTGTAGTGTGCACGACTAA 828 0.3877 MASTSRRLPTPQEREKWKHFFDTIIDPNLAPIEIPQPFFHRMKENTFWMRIYPPLQPVKTEFPPQATLKRKHQKEIFSNNDDQDEPNSNRCKRPKGSKQTMYLKSPRPCQKQNILKSIPKELSRRRHPNLKIRASQEKKNLKSTPKKSNKHHQYKHSRGPAIVKLNPDGSYGWEKIVTRAGAAHTRPQVMHFPKQFSRLFLGKKQNIMLVQAEAGDTFSCKIKTAARNRDEKYITKEWTKFVRRNNLQVGDKLIFTLQNQPTKLLIQIIRCSVHD 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05170 275 MobiDBLite consensus disorder prediction 144 158 - -
Trre2g05170 275 SUPERFAMILY DNA-binding pseudobarrel domain 186 270 IPR015300 -
Trre2g05170 275 Pfam B3 DNA binding domain 189 270 IPR003340 GO:0003677
Trre2g05170 275 SMART B3_2 174 272 IPR003340 GO:0003677
Trre2g05170 275 ProSiteProfiles B3 DNA-binding domain profile. 175 272 IPR003340 GO:0003677
Trre2g05170 275 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 76 271 IPR044837 -
Trre2g05170 275 MobiDBLite consensus disorder prediction 122 143 - -
Trre2g05170 275 MobiDBLite consensus disorder prediction 76 103 - -
Trre2g05170 275 MobiDBLite consensus disorder prediction 76 92 - -
Trre2g05170 275 CDD B3_DNA 190 270 IPR003340 GO:0003677
Trre2g05170 275 Gene3D - 89 272 IPR015300 -
Trre2g05170 275 MobiDBLite consensus disorder prediction 122 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05170 Trre-Chr2 58915308 58917077 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g05170 B3 1.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05170 - K13193 tpra:123916786 88.5817