Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05169 ATGGCTTCTACTTCAAGAAGATTACCAACACCTCAAGAAAGAGAAAAGTGGAAGCACTTTTTTGACACTATCATAGATCCAAATTTGGCACCAATAGAAATCCCTCAACCTTTTTTCCACAGAATGAAAGGTGAGTTTATAAAACACACATTTGGTTGGATCAGGGGTCCAAAAAAAATGAAAATCATGGTTAGATATCTCCAATCCAATAGTGGTATCAAGCTCTCCTCTGGAGTTTGTGTTTCTCGATATTTTGGATTTGTTATGCCAACAAGGGTGACACTTAGCTATGTGATTGAAGAGAATACTTTTTGGATGAGAATTTACCCTCCACTTCAACCTGTGAAAACTGAATTTCCACCTCAGGCAACTTTGAAAAGGAAGCATCAAAAGGAAATATTCAGCAATAATGATGATCAAGATGAGCCAAATTCCAATAGGTGCAAGAGACCTAAAGGCAGCAAACAAACTATGTATTTGAAGTCCCCCCGTCCATGTCAAAAACAGAACATTCTGAAGTCTATCCCAAAGGAATTAAGCAGACGACGACACCCAAATTTGAAGATTCGTGCATCTCAGGAAAAAAAAAATTTGAAATCCACACCAAAGAAATCAAACAAACACCATCAGTATAAGCATTCAAGGGGACCAGCCATTGTTAAGTTGAATCCTGATGGAAGTTATGGTTGGGAGAAGATTGTAACTAGAGCTGGTGCAGCCCATACAAGACCTCAAGTCATGCATTTTCCTAAGCAATTTTCGAGATTATTTTTGGGAAAAAAACAAAACATAATGTTGGTCCAAGCTGAGGCAGGAGATACATTCTCTTGCAAGATTAAGACAGCAGCAAGGAATAGAGATGAAAAATACATAACAAAAGAGTGGACCAAATTTGTGAGAAGAAACAACCTCCAGGTTGGAGACAAGCTCATTTTCACTCTTCAGAACCAACCAACAAAGCTCCTGATTCAGATCATCCGTTGTAGTGTGCACGACTAA 999 0.3854 MASTSRRLPTPQEREKWKHFFDTIIDPNLAPIEIPQPFFHRMKGEFIKHTFGWIRGPKKMKIMVRYLQSNSGIKLSSGVCVSRYFGFVMPTRVTLSYVIEENTFWMRIYPPLQPVKTEFPPQATLKRKHQKEIFSNNDDQDEPNSNRCKRPKGSKQTMYLKSPRPCQKQNILKSIPKELSRRRHPNLKIRASQEKKNLKSTPKKSNKHHQYKHSRGPAIVKLNPDGSYGWEKIVTRAGAAHTRPQVMHFPKQFSRLFLGKKQNIMLVQAEAGDTFSCKIKTAARNRDEKYITKEWTKFVRRNNLQVGDKLIFTLQNQPTKLLIQIIRCSVHD 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05169 332 MobiDBLite consensus disorder prediction 133 160 - -
Trre2g05169 332 SUPERFAMILY DNA-binding pseudobarrel domain 243 327 IPR015300 -
Trre2g05169 332 ProSiteProfiles B3 DNA-binding domain profile. 232 329 IPR003340 GO:0003677
Trre2g05169 332 Gene3D - 153 329 IPR015300 -
Trre2g05169 332 MobiDBLite consensus disorder prediction 177 200 - -
Trre2g05169 332 MobiDBLite consensus disorder prediction 201 215 - -
Trre2g05169 332 CDD B3_DNA 247 327 IPR003340 GO:0003677
Trre2g05169 332 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 132 328 IPR044837 -
Trre2g05169 332 Pfam B3 DNA binding domain 246 327 IPR003340 GO:0003677
Trre2g05169 332 SMART B3_2 231 329 IPR003340 GO:0003677
Trre2g05169 332 MobiDBLite consensus disorder prediction 177 219 - -
Trre2g05169 332 MobiDBLite consensus disorder prediction 133 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05169 Trre-Chr2 58915308 58917077 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g05169 B3 1.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05169 - K03163 tpra:123904760 191.43