Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g05169 | ATGGCTTCTACTTCAAGAAGATTACCAACACCTCAAGAAAGAGAAAAGTGGAAGCACTTTTTTGACACTATCATAGATCCAAATTTGGCACCAATAGAAATCCCTCAACCTTTTTTCCACAGAATGAAAGGTGAGTTTATAAAACACACATTTGGTTGGATCAGGGGTCCAAAAAAAATGAAAATCATGGTTAGATATCTCCAATCCAATAGTGGTATCAAGCTCTCCTCTGGAGTTTGTGTTTCTCGATATTTTGGATTTGTTATGCCAACAAGGGTGACACTTAGCTATGTGATTGAAGAGAATACTTTTTGGATGAGAATTTACCCTCCACTTCAACCTGTGAAAACTGAATTTCCACCTCAGGCAACTTTGAAAAGGAAGCATCAAAAGGAAATATTCAGCAATAATGATGATCAAGATGAGCCAAATTCCAATAGGTGCAAGAGACCTAAAGGCAGCAAACAAACTATGTATTTGAAGTCCCCCCGTCCATGTCAAAAACAGAACATTCTGAAGTCTATCCCAAAGGAATTAAGCAGACGACGACACCCAAATTTGAAGATTCGTGCATCTCAGGAAAAAAAAAATTTGAAATCCACACCAAAGAAATCAAACAAACACCATCAGTATAAGCATTCAAGGGGACCAGCCATTGTTAAGTTGAATCCTGATGGAAGTTATGGTTGGGAGAAGATTGTAACTAGAGCTGGTGCAGCCCATACAAGACCTCAAGTCATGCATTTTCCTAAGCAATTTTCGAGATTATTTTTGGGAAAAAAACAAAACATAATGTTGGTCCAAGCTGAGGCAGGAGATACATTCTCTTGCAAGATTAAGACAGCAGCAAGGAATAGAGATGAAAAATACATAACAAAAGAGTGGACCAAATTTGTGAGAAGAAACAACCTCCAGGTTGGAGACAAGCTCATTTTCACTCTTCAGAACCAACCAACAAAGCTCCTGATTCAGATCATCCGTTGTAGTGTGCACGACTAA | 999 | 0.3854 | MASTSRRLPTPQEREKWKHFFDTIIDPNLAPIEIPQPFFHRMKGEFIKHTFGWIRGPKKMKIMVRYLQSNSGIKLSSGVCVSRYFGFVMPTRVTLSYVIEENTFWMRIYPPLQPVKTEFPPQATLKRKHQKEIFSNNDDQDEPNSNRCKRPKGSKQTMYLKSPRPCQKQNILKSIPKELSRRRHPNLKIRASQEKKNLKSTPKKSNKHHQYKHSRGPAIVKLNPDGSYGWEKIVTRAGAAHTRPQVMHFPKQFSRLFLGKKQNIMLVQAEAGDTFSCKIKTAARNRDEKYITKEWTKFVRRNNLQVGDKLIFTLQNQPTKLLIQIIRCSVHD | 332 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g05169 | 332 | MobiDBLite | consensus disorder prediction | 133 | 160 | - | - | |
Trre2g05169 | 332 | SUPERFAMILY | DNA-binding pseudobarrel domain | 243 | 327 | IPR015300 | - | |
Trre2g05169 | 332 | ProSiteProfiles | B3 DNA-binding domain profile. | 232 | 329 | IPR003340 | GO:0003677 | |
Trre2g05169 | 332 | Gene3D | - | 153 | 329 | IPR015300 | - | |
Trre2g05169 | 332 | MobiDBLite | consensus disorder prediction | 177 | 200 | - | - | |
Trre2g05169 | 332 | MobiDBLite | consensus disorder prediction | 201 | 215 | - | - | |
Trre2g05169 | 332 | CDD | B3_DNA | 247 | 327 | IPR003340 | GO:0003677 | |
Trre2g05169 | 332 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 132 | 328 | IPR044837 | - | |
Trre2g05169 | 332 | Pfam | B3 DNA binding domain | 246 | 327 | IPR003340 | GO:0003677 | |
Trre2g05169 | 332 | SMART | B3_2 | 231 | 329 | IPR003340 | GO:0003677 | |
Trre2g05169 | 332 | MobiDBLite | consensus disorder prediction | 177 | 219 | - | - | |
Trre2g05169 | 332 | MobiDBLite | consensus disorder prediction | 133 | 149 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g05169 | Trre-Chr2 | 58915308 | 58917077 | Dispersed/Tandem |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Trre2g05169 | B3 | 1.5e-10 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g05169 | - | K03163 | tpra:123904760 | 191.43 |