Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05162 ATGGAGTTTATATGGCTATGTGGCATTTTTGTTGCAATGTTTGCAACACTTTGCCTCATATTGTTATTGATACTAACAATTTCTTGGTGGATTTTACCTATCCAAGTACAAAAGAAGCTTAAAAGAAATGGTTTTGGAGGACCAACTCCAAGCTTTCCACTTGGAAATATTAAAGAGATGAAAAGAAAGAATAGCAATATTCAATCTTTAGTTGCATCTTCAAATCCCACAAATGATATTCACTCACAAGTTTTTCCCTACTTTTCGTCTTGGACAAAATCACATGGTAAGGTGTTTGTGTATTGGCTAGGGACAGAACCATTTTTGTACATTGCGGATGCAGAATTCTTGAAGAAAATGTCAACAGAAGTGATGGCAAAGAAATGGGGAAAACCTAGTGTTTTTAGAACTGATAGAGATCCAATGTTTGGAAGTGGTTTGGTGATGGTGGAAGGCAATGATTGGGTACGTCATAGACACATTGTTGCACCAGCATTCAACCCTCTTAATCTCAAGGTGATGGCAAGTATGATGATTGAGTCTACAAATCAAATGATAGATAGATGGACAAACCAAATAAACTTTGGCAACCTTGAAATTGATGTGGAAAAAGAAATTATAACAATAGCTGGAGAGATTATAGCAAAAACAAGTTTTGGTGTGGAAGATGAAAATGCTAAAGAAGTGTTTAACAAATTAAGAGCCTTACAAATGACTCTTTTTAACACTAATAGATATGTAGGGGTTCCCTTTGGCAAGTATTTTAATGTCAAGAAAAATCAAGAGGCCAAAAAACTTGGCAAAGAAATTGATAAGCTCTTATTGACAATTGTAGAAGCTAGGAAAAATTCACTTAAAAAGAACTCTCAAAAAGACTTATTAGGGTTATTGCTACAAGAAAATAATAATGATGGCCGATTAGGAAAGACACTATCATCAAGAGAAGTAGTTGATGAATGCAAGACTTTCTTCTTTGGTGGACATGAAACAACAGCACTTGCTATCACATGGACTTTGATGCTTCTAGCCACACATGAAGATTGGCAAAATCAATTAAGAGAAGAGATCAAAGAAGTTGTGGGAAATAATGAGCTTGATATTACTATGCTTGCTGGTCTAAAAAAGATGAAGTGGGTGATGAATGAAGTTCTAAGACTATATCCACCAGCACCAAATGTGCAAAGACAAGCAAGAGAAGATATTCAAGTTGATGATGTAACGGTGCCCAACGGAACAAATATGTGGATCGATGTAGTAGCGATGCACCACGACCCTGAATTATGGGGAGAAGATGTGAATGAGTTTAAACCAGAGAGGTTCATGGATGATGTTAATGGTGGATGCAAACACAAGATGGGGTATTTACCTTTTGGATTTGGAGGGAGGATGTGTGTAGGTAGAAACTTGACATTCATGGAGTATAAGATAGTATTAACAAGACTTCTCTCTAACTTCACTTTTAAGGTTTCACCAAATTATCACCATTCACCAGCCATTATGCTCTCCCTAAGGCCCACTCATGGACTTCAACTCATTGTTCAACCCCTTAATTAG 1554 0.3655 MEFIWLCGIFVAMFATLCLILLLILTISWWILPIQVQKKLKRNGFGGPTPSFPLGNIKEMKRKNSNIQSLVASSNPTNDIHSQVFPYFSSWTKSHGKVFVYWLGTEPFLYIADAEFLKKMSTEVMAKKWGKPSVFRTDRDPMFGSGLVMVEGNDWVRHRHIVAPAFNPLNLKVMASMMIESTNQMIDRWTNQINFGNLEIDVEKEIITIAGEIIAKTSFGVEDENAKEVFNKLRALQMTLFNTNRYVGVPFGKYFNVKKNQEAKKLGKEIDKLLLTIVEARKNSLKKNSQKDLLGLLLQENNNDGRLGKTLSSREVVDECKTFFFGGHETTALAITWTLMLLATHEDWQNQLREEIKEVVGNNELDITMLAGLKKMKWVMNEVLRLYPPAPNVQRQAREDIQVDDVTVPNGTNMWIDVVAMHHDPELWGEDVNEFKPERFMDDVNGGCKHKMGYLPFGFGGRMCVGRNLTFMEYKIVLTRLLSNFTFKVSPNYHHSPAIMLSLRPTHGLQLIVQPLN 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05162 517 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05162 517 PRINTS E-class P450 group I signature 92 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05162 517 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05162 517 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05162 517 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05162 517 PRINTS E-class P450 group I signature 418 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05162 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506|GO:0016705
Trre2g05162 517 PANTHER CYTOCHROME P450 FAMILY MEMBER 21 508 - -
Trre2g05162 517 SUPERFAMILY Cytochrome P450 81 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05162 517 Coils Coil 263 283 - -
Trre2g05162 517 Pfam Cytochrome P450 83 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05162 517 Gene3D Cytochrome P450 30 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05162 517 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05162 517 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05162 517 PRINTS P450 superfamily signature 464 475 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g05162 517 PRINTS P450 superfamily signature 378 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05162 Trre-Chr2 58875829 58879119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05162 1 516 Cytochrome P450 AT5G52400 59.117 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05162 - - gmx:100785284 862.833