Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05153 ATGGCTCCTAAACAACCAAGTACCGGTCTCTTCGTTGGATTGAACAAAGGTCACATCGTCACCAAGAAGGAATTGCCTCTTAAACCTTCAGCTCGCAAGGGGAAAACAAGCAAGAGGGTGCACTTTGTGAGGAATCTCATTAGAGAGGTTGCTGGTTTTGCACCTTACGAGAAGCGTATCACTGAGTTGCTCAAGGTTGGAAAAGATAAGAGGGCTTTGAAGGTTGCAAAGAGAAAGCTTGGAACACACAAGCGTGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCAGGAAGATGAGAGCTGGTGGAGCCGGAGATAAGAAGAAATAA 333 0.4565 MAPKQPSTGLFVGLNKGHIVTKKELPLKPSARKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05153 110 FunFam 60S ribosomal protein L36 1 106 - -
Trre2g05153 110 MobiDBLite consensus disorder prediction 79 110 - -
Trre2g05153 110 Gene3D 60S ribosomal protein L36 1 108 IPR038097 -
Trre2g05153 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Trre2g05153 110 MobiDBLite consensus disorder prediction 87 110 - -
Trre2g05153 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 108 IPR000509 GO:0003735|GO:0005840|GO:0006412
Trre2g05153 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05153 Trre-Chr2 58789678 58790640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05153 7 110 Cytoplasmic Ribosomal Protein Gene Family AT5G02450 81.731 5.52e-56 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05153 K02920 - gmx:100526979 209.92