Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05150 ATGGGTAGCATCCAAGAACCAGTATCGGTTGCAGAAGAGCGACTCGATGATGTACAAAACGACACCGTTTACGTTGCGGTGGGAAACAACGCGGAGAAGAACCATAAACTATTGCATTGGGTAATTCACAATTTCTCAGGGAAGAAAATTTGCCTTCTTCATATTCATCAACCTGACCCTGTCAATTCGTTGAACCATGGAATCAAGGAGCATGGCAGTCAAACAGTGCATGAATTCCTAGACCAGTACATCCTCACTCTGGTCCCAGCAGGGGTACAGGCCTCTAAATTGTTGATTGAGAAGGACAATATTGAGAAAGGGATCAAAGAAGCTATCTTTCAACACAATATTAGATGTCTTGTAATGGGAGCAGCTGCAGACAGACATAAGACGGGGTTAGATAGTGAAGACACGCGTGGAATAGAGACTACCCCTGTTTTGTTGATGCTCGACTCAGATACAGAAGCCAAACAATCTGAAAAAATTAAATCAGAATTGATTCCTAATGTATTGAAATATTTAGATTCTAGTGATATGGAAGAGACTGAAAACGTTATTGCAAGGACAAAGTTGGCAGATTTACTTATTCATGAGGCTAGACCATCAGACACAATGCCTTCATTACCAGCATCCTTACCAGACGACGAAGCATTACAAAACTGGCGTGCTAAGGAGATAAGTAGGAGAAAAGAAGTTGAAGAACAATTGGCAAGGGAAAAGCAAGACGTACTAGAAATGAAGAATCAGCGAGATAAAATAATATGTGAATTGCAAATGGTCCAAGACCAAAGTTCAGCTCTTAGAAACCAATTGTTTGAGTCCAAGTGTACAGCAACTGAGTTGGAAGAGAAGATTCTATCTGCTGTGGGCCTTTTGATAAGTTTCAAGGAAAAACGAGATAAGCTGAGGATAGAACATGCAAGTGCAGTTAGGAAAGTCCAAGTGCTGACAAAAATTGGAGAAGCGGATACTACATCCTCTTATGTGGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAACTCATGATTTTGACCAATCTTGGAAAATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCTTGTTGCCATAAAAATGCTACCCTCTTATGGTTGCCAGAGCCAATCGGAGTTCCAGCATCAGGTAGAGGTTTTAAGTAGAGTAAGACATCCAAATCTGTTAACACTAATTGGAAGCTGTGCAGAGTATAAGTCACTTGTGTATGAATACCTAAACAATGGTAGCCTCGCAAGCCATCTTGCCTGCAAAGACAAGACTCCACTTCCATGGCAAATTCGAATATCTATTGCTACTGACATATGCTCTGCTCTTATCTTCCTTCACTCCAGTGAGCCTTGTATTATCCATGGGAATTTGAAGCCTAGTAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTTGGTGACTTAGGGATTCCTTCTCTAGTCCAGCATAGTGTGGATTCAGCTGACACAAGCCCAGTAGTATGTAACAACTCTCATGAAAATTTGGCATATGTGGATCCAGAGTATCTTGACACTGGTAAACTTACACCAGAATCAGATGTGTATTCATTTGGAATCATACTGTTACAACTTTTAACTGGAAGACCACTTTCGGGGCTAGTTAGAGATATGAGATGTGCATTGGAAAAAGAAAATCTTAAAACTGTGTTGGACATGTCAGCTGGTGAATGGCCACTTTATCAAACCACACAACTGGCATATTTAGCATTGAGGTGTTGTGAGAAAACTTGGTTGAACCGGCCAGATCTTGTGTCAGAAGTCTGGAGTGTTCTTAAACCATTCAGAACTATTTGCATAGACAGGAGACAAGAGTTGACTTCTAAGAAGCTTCAACGAGCTCCTTCTCATTTTGTCTGTCCCATTGTCCAGGAAGTTATGGAAGATCCATACATAGCTGCAGATGGCTTTACATATGAAGAAGAGGCAATAAGAGGATGGTTGGACAGTGGTCACGATACTTCCCCTATGACAAACCTCACACTTGAACACACAGATTTGGTACCTAATTATGCACTACATAATGCCATTCGAGAGTGGCAGCAACAGTGA 2103 0.4132 MGSIQEPVSVAEERLDDVQNDTVYVAVGNNAEKNHKLLHWVIHNFSGKKICLLHIHQPDPVNSLNHGIKEHGSQTVHEFLDQYILTLVPAGVQASKLLIEKDNIEKGIKEAIFQHNIRCLVMGAAADRHKTGLDSEDTRGIETTPVLLMLDSDTEAKQSEKIKSELIPNVLKYLDSSDMEETENVIARTKLADLLIHEARPSDTMPSLPASLPDDEALQNWRAKEISRRKEVEEQLAREKQDVLEMKNQRDKIICELQMVQDQSSALRNQLFESKCTATELEEKILSAVGLLISFKEKRDKLRIEHASAVRKVQVLTKIGEADTTSSYVVEFPAFSFMEINEATHDFDQSWKIGEGRYGSVYKGLLRNMLVAIKMLPSYGCQSQSEFQHQVEVLSRVRHPNLLTLIGSCAEYKSLVYEYLNNGSLASHLACKDKTPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLGDLGIPSLVQHSVDSADTSPVVCNNSHENLAYVDPEYLDTGKLTPESDVYSFGIILLQLLTGRPLSGLVRDMRCALEKENLKTVLDMSAGEWPLYQTTQLAYLALRCCEKTWLNRPDLVSEVWSVLKPFRTICIDRRQELTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLDSGHDTSPMTNLTLEHTDLVPNYALHNAIREWQQQ 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05150 700 Pfam U-box domain 631 699 IPR003613 GO:0004842|GO:0016567
Trre2g05150 700 Coils Coil 222 249 - -
Trre2g05150 700 ProSiteProfiles U-box domain profile. 630 700 IPR003613 GO:0004842|GO:0016567
Trre2g05150 700 ProSiteProfiles Protein kinase domain profile. 347 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05150 700 SUPERFAMILY Protein kinase-like (PK-like) 323 601 IPR011009 -
Trre2g05150 700 Pfam Protein tyrosine and serine/threonine kinase 352 601 IPR001245 GO:0004672|GO:0006468
Trre2g05150 700 SUPERFAMILY RING/U-box 628 700 - -
Trre2g05150 700 Gene3D Phosphorylase Kinase; domain 1 317 419 - -
Trre2g05150 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 700 IPR013083 -
Trre2g05150 700 SMART Ubox_2 634 697 IPR003613 GO:0004842|GO:0016567
Trre2g05150 700 CDD RING-Ubox_WDSUB1-like 632 687 - -
Trre2g05150 700 PANTHER OS02G0152300 PROTEIN 23 130 - -
Trre2g05150 700 ProSitePatterns Protein kinases ATP-binding region signature. 353 374 IPR017441 GO:0005524
Trre2g05150 700 Gene3D Transferase(Phosphotransferase) domain 1 420 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05150 Trre-Chr2 58769286 58775785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05150 249 700 U-box Gene Family AT3G49060 51.293 6.62e-157 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre2g05150 PK_Tyr_Ser-Thr 2.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05150 - - gmx:100799675 1003.43