Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05149 ATGCCAGTTGCAAAACTTACTGCTTCAGGTACTCCCAATTTTATGAAAACAGAAGACGGAAATGATTCTTTGGATACATTAATCAGACAAGCAGTTGGAAAAGAACCTTTCCTTTCGTTTCCTAGAGCTGGTGACAGGCCAGCACAGTGGATTCAATTGTTTCATGCTTTAGAACAGCAACAAGAAATTCCAGGGTGGCCTTTGTTCTCTCCTGCAAAGGTTCAGTTATATAAGTGCGACAAGTGTACCAGAGAGTTTTGCTCACCCATTAATTATAGAAGACATAAACGTGTATACCATCGGTTGAAAAAGCTTGATAAGGACTCTAAGAAAAATAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCTATAGAAGAGGCAAAGGAAGCTGTGTCATTTGAGAATGTGACACTAGAGGAGGTTCCAGGGTCTTCAATTTTACAAGCTCTCTCAACTCTTAGAACACAACAAGGATTCTATTCTCTTCCACATAATTATCTCAGAGCTGGCTTTTCCCTTTTGGATATTGTTCAATCCAGGCCTTCTAGTTTCCCTATATCTTCCCAGAAGTTGTTTGATATTCTTGATGATTCCAGTGAAAAAACATTTTTATGTGGAACAGCAGTGTCAATGCAAAGACATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAATTGGTGAATGCATGGCTCGCAGACAAAGATGCCGAAGCATTGAGATGCCAGAAGCGGCTGATGGAGGAGGAGGAAGCTGCTCAGAGAAGAAAATCTGAGATTTTGGAGAGAAAACGCCAGAAAAAGCTTAGGCAGAAGGCAAGGAGCCAACTTGAAAATGACACAGAAATTAAAGGGAGCATCAGCAGCACAGGAGAGGATCTATCACCAGAGGAAGGATCTCCGGCTGCATGTGACTTTGAAGCACATAGAGAAGATGTATTTGCAGATCATGCTTCTTCACCACATGTAACTTATCACTTTCTAGACACCAATGAATGTGTCGATGGGGATACACAGTCAGGATACGACTGTGACACTGATCAGAACGTGGAGCCACAAACATCAGAAAGGGATGCTCAGTCAGGTTATGATTGTGACACTGATCGGAATTTAGAAAGACAGACATCACACAGACATAATCCTCGACGCACAGCGGCTGCTAGACGGCAAGGGCTTCCGAAGTCACAACGAACTATTGCCAATGGTTTGTATGCAGGCCAGAACTCTCAAAAGTCAAAGTTTGGAGTCATTCCAAAATATGGAAATGGAACAAACCGTGATCAAAGGGCAGCTCCTATAGTTAATGGTGGTAAAGTTTGGAGCAGGAAGCCTAAACCAGAAACAGATGCAGTGGTTTTAAAAACCAGACTGCACAAAGAACCAGCCAAAACTAAGAATCATGAGGTTTTGATAGGATCTGTATCAGTTACACTGGCCAATTGCAGCCAAGCAGAGTGTTATCTTGTCACATCCCAAGAGGACAGTTTAGTAGAGAATTTGGCCGACCAAAATGTTGCTCAGGAGAAGCCAATTAAAACTGACTCCTTTCACGGAGGCAACAATCGGTCAAGAGTTAAGCTTTGGAGACCAGTTAGCCAGCACGGAACTAAAAATCCAATGCCACTTGAAAGTGTTGGGACAGAAGTTGGTGTAGTCTATGGGAATGATGATCAAAATTTGTCAGTTCAAAGTAGTTTAAGGTTGTGTAATATAGATGGAGGTGATATTGGTTCTGGGAACAAATCCCATGTCCATGCTGCAAAAGCCTTTCTTGCACAAAGATGGAAGGAAGCAATTTCATCACATCATGTGGAGTTGGTAATTTCACCTGATTCTGAACCTCCCGGGTTCCAGCCAGTCCAGGATTGCGAGCTATCGTCATGTCGATCTTCTAATACGGAGAGATATAGCATTCTTGCAAATACAGAGAACTTGTTGCCTGCAAATACCGGAGTTGCTAAATCCAAACCCAGAGTAAAGCCTGAGAAGGGAATCAAGATAAAGTACATTCCAAAACTAAAAGCCGCAGCATAA 2082 0.4236 MPVAKLTASGTPNFMKTEDGNDSLDTLIRQAVGKEPFLSFPRAGDRPAQWIQLFHALEQQQEIPGWPLFSPAKVQLYKCDKCTREFCSPINYRRHKRVYHRLKKLDKDSKKNRDLLGAYWDKLSIEEAKEAVSFENVTLEEVPGSSILQALSTLRTQQGFYSLPHNYLRAGFSLLDIVQSRPSSFPISSQKLFDILDDSSEKTFLCGTAVSMQRHVFDGEAGKIGLEPKNLVACTSFLLEQKLVNAWLADKDAEALRCQKRLMEEEEAAQRRKSEILERKRQKKLRQKARSQLENDTEIKGSISSTGEDLSPEEGSPAACDFEAHREDVFADHASSPHVTYHFLDTNECVDGDTQSGYDCDTDQNVEPQTSERDAQSGYDCDTDRNLERQTSHRHNPRRTAAARRQGLPKSQRTIANGLYAGQNSQKSKFGVIPKYGNGTNRDQRAAPIVNGGKVWSRKPKPETDAVVLKTRLHKEPAKTKNHEVLIGSVSVTLANCSQAECYLVTSQEDSLVENLADQNVAQEKPIKTDSFHGGNNRSRVKLWRPVSQHGTKNPMPLESVGTEVGVVYGNDDQNLSVQSSLRLCNIDGGDIGSGNKSHVHAAKAFLAQRWKEAISSHHVELVISPDSEPPGFQPVQDCELSSCRSSNTERYSILANTENLLPANTGVAKSKPRVKPEKGIKIKYIPKLKAAA 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05149 693 MobiDBLite consensus disorder prediction 296 311 - -
Trre2g05149 693 MobiDBLite consensus disorder prediction 359 412 - -
Trre2g05149 693 Coils Coil 253 280 - -
Trre2g05149 693 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 105 IPR013087 -
Trre2g05149 693 MobiDBLite consensus disorder prediction 267 295 - -
Trre2g05149 693 ProSitePatterns Zinc finger C2H2 type domain signature. 79 100 IPR013087 -
Trre2g05149 693 MobiDBLite consensus disorder prediction 359 376 - -
Trre2g05149 693 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 691 - -
Trre2g05149 693 MobiDBLite consensus disorder prediction 377 395 - -
Trre2g05149 693 MobiDBLite consensus disorder prediction 267 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05149 Trre-Chr2 58761634 58767336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05149 18 688 C2H2 Transcription Factor Family AT4G25610 41.056 2.86e-138 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g05149 None None None