Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05108 ATGGCTGAGGATTGGGATCTTTTTGCCATTGTTAGAAGTTGCCAATCAACCACCAATACTAGCACAACTACAACTAATAGTACCATACCATCTTCCATTAATTCCACCTCTAATTTGAAGGTAGAATTAGAATATGATGCATTTTCTTTTCCTAATATAGTGCAACCTATAACCAATGAGGTTCAAGGGTTAAACCGATTATTCACATCTTTTAACCCCACTACCAACCCCAACACCACTATTACCACTAGTGGTTATGGTATCAATCCCAATTCCCCTAATATTGCAAGATGCATTGGACAACAACATCACAATATTGCTCCTACTACTTCCACTTCCATTTGGCCTAATTTTGTTCAAGAAGCCTCCACTTCTAGCTTCAACAAATTCTATAACCAACAACAACATCAACTACAAGTAATTCAGAAACAAGAATTCCATATACCTCAAAGCACACAACCTCAAACACCAAGATCAAGAAAAAGAAAAAGTCAACAAGGAAAAATGGTGTGTCATGTAACTGCAGATAACCTCTCTACAGATTTGTGGGCATGGAGAAAATACGGACAGAAACCCATTAAGGGTTCTCCATATCCAAGGAACTATTATAGATGTAGTAGTTCCAAAGGTTGTACCGCGCGAAAGCAAGTTGAAAGGAGCAACACCGAAACAGACATGTTTATTGTGACATACACCGGAGATCACAACCACCCTAGACCCACCCACCGGAACTCGCTCGCCGGAAGTACACGGACAAAGTCTCCGGCGATACAACCATCCACTTCAATTTCGTGTCAACCCAACACCGCGATTTCTTGCTCCTCTTTAGCACCAAACTCTTTTGGTAAAGAAGAAGAAGAAGAAGAAGAAATTGACATGGAAATTGAAACTGATGAAGAAGGTGAAGATGGTTGTGATATTCCACAATCATCCAACCATGGTCAATAG 948 0.4019 MAEDWDLFAIVRSCQSTTNTSTTTTNSTIPSSINSTSNLKVELEYDAFSFPNIVQPITNEVQGLNRLFTSFNPTTNPNTTITTSGYGINPNSPNIARCIGQQHHNIAPTTSTSIWPNFVQEASTSSFNKFYNQQQHQLQVIQKQEFHIPQSTQPQTPRSRKRKSQQGKMVCHVTADNLSTDLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCTARKQVERSNTETDMFIVTYTGDHNHPRPTHRNSLAGSTRTKSPAIQPSTSISCQPNTAISCSSLAPNSFGKEEEEEEEIDMEIETDEEGEDGCDIPQSSNHGQ 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05108 315 FunFam WRKY transcription factor 22 162 233 - -
Trre2g05108 315 MobiDBLite consensus disorder prediction 242 279 - -
Trre2g05108 315 SUPERFAMILY WRKY DNA-binding domain 174 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g05108 315 MobiDBLite consensus disorder prediction 147 170 - -
Trre2g05108 315 MobiDBLite consensus disorder prediction 283 305 - -
Trre2g05108 315 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 289 IPR044810 GO:0003700
Trre2g05108 315 Pfam WRKY DNA -binding domain 181 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g05108 315 ProSiteProfiles WRKY domain profile. 174 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g05108 315 MobiDBLite consensus disorder prediction 231 315 - -
Trre2g05108 315 Gene3D WRKY domain 163 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g05108 315 SMART WRKY_cls 179 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05108 Trre-Chr2 58455545 58456831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05108 158 293 WRKY Transcription Factor Family AT5G52830 61.074 3.08e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre2g05108 WRKY 1.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05108 - - mtr:11414845 436.417