Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05104 ATGGAAGACCATCCATCACCACTTCCACCAAAAACATACAAACTAACAGCAACTTCAATTTCTTACTCAAAAAACCTACAAACAAACAACACTATCATTGCACCATTTCTCTTGTTCAAAAACTGTACACCAATTCCACCAACCTATATCCTAAAAGATGTTTCACTCACAGCATACCCTTCTGAGATTCTTGCTATTGTTGGTCCAAGTGGTGCAGGAAAATCAACTCTTTTAGACATTCTTTCAGCTAGAAGATTACCCTTAAGTGGAACACTTTCCCTTAACTCTTCACCTATTAATAACCCTTCAACATTCAGAAAACTTTCTGCTTATGTTCCTCAACATGATGCATGTCTTCCCATGTTAACTGTTTCTGAAACTTTTGCTTTTTCTGCTTCACTTCTTAAGCCGAAAACTATCGATATTGCTTCGATTGTTTCGTCTCTTTTAAATGAGCTTAGACTGACTCATTTAGCTAATACAAGGCTTAATAGTGGTTTATCTGGCGGCGAACGTAGAAGAGTCTCTATTGGACTTAGTCTTCTTCATGATCCTGCTGTTTTGCTTCTTGATGAACCTACTTCTGGTCTTGATAGTTCTTCTGCTTACAAAGTCATGCAAACTCTTAAATCAACTTGTGTTTCATATAATAGAACAATTGTTCTTTCAATTCATCAACCAAGTTTCAAGATTCTCTCTTGTATTGATAGAATCTTGCTTCTTTCAAAAGGAACTGTTGTTCATCATGGAAGCTTAGCTTCACTTCAAGCATTTTTGCATTCAAAAGGTTTCACTGTCCCTCATCAGCTTAATGCATTGGAATATGCCATGGAAATATTAAACCAATTGAATGAGATTAAACCAATGATTACTCCTCCAACTCCACCTGAATCACCTGAACAATCCTCACCAGAAAAATCTAAATCTACTATAGGTTGTAATTCTCTGTCTGAAAATATTGGAACTAGAACTAAAAGTAGAGAAATCAGGTACAAAAGTTCAAGGATTCATGAAATTTGCACACTATATAGAAGATTTTGGAAGATCATATACAGAACAAGACAACTTCTGTTAACAAACACAGCAGAAGCACTTCTTGTTGGTCTTGTTTTGGGTACAATTTACATAAACATTGGTTTTGATAAAGAAGTTACAAGATGTTTTATTTGGGTCCAAGAGAATGATCAAGACTGCATGATTACTGGTGGTGATGTCTTGCAGAAGAAAGGACTTCATGAGGGACAAAGATGGACTAATGTGTACTTTTTGATTGGATTCTTTGTGTTTTACCGTGTGCTTTGTTTCTTGGTTTTACTTAGAAGGGTTTCAAGATCCAAAACTTGA 1344 0.3571 MEDHPSPLPPKTYKLTATSISYSKNLQTNNTIIAPFLLFKNCTPIPPTYILKDVSLTAYPSEILAIVGPSGAGKSTLLDILSARRLPLSGTLSLNSSPINNPSTFRKLSAYVPQHDACLPMLTVSETFAFSASLLKPKTIDIASIVSSLLNELRLTHLANTRLNSGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSSSAYKVMQTLKSTCVSYNRTIVLSIHQPSFKILSCIDRILLLSKGTVVHHGSLASLQAFLHSKGFTVPHQLNALEYAMEILNQLNEIKPMITPPTPPESPEQSSPEKSKSTIGCNSLSENIGTRTKSREIRYKSSRIHEICTLYRRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINIGFDKEVTRCFIWVQENDQDCMITGGDVLQKKGLHEGQRWTNVYFLIGFFVFYRVLCFLVLLRRVSRSKT 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05104 447 Gene3D - 39 288 IPR027417 -
Trre2g05104 447 MobiDBLite consensus disorder prediction 301 315 - -
Trre2g05104 447 Pfam ABC-2 type transporter 225 285 IPR043926 GO:0140359
Trre2g05104 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 255 IPR027417 -
Trre2g05104 447 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 13 380 - -
Trre2g05104 447 ProSitePatterns ABC transporters family signature. 167 181 IPR017871 GO:0005524|GO:0016887
Trre2g05104 447 SMART AAA_5 60 245 IPR003593 GO:0016887
Trre2g05104 447 FunFam ATP-binding cassette transporter 41 261 - -
Trre2g05104 447 Pfam ABC transporter 51 195 IPR003439 GO:0005524
Trre2g05104 447 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 268 IPR003439 GO:0005524
Trre2g05104 447 MobiDBLite consensus disorder prediction 288 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05104 Trre-Chr2 58439010 58440854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05104 46 262 Calmodulin-binding Proteins AT2G36910 29.412 7.65e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05104 K05681 - cave:132167224 498.434