Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05096 ATGGAAGAGAAGCAAATTTTGTTGTCAGCAGCTTTGTTGTTGGGGTTGGGTTTGGCACTTGGAATATGGATTGATCAAATTGGGATTTTGTTGGAAGCACTGAGTGTTGGGATTGGGTTGTGTGTAGGACTGGCAATATGGGTTGTTGTTGGTTTTGGAGGTGATCATGTGTCTAATCAGGTTTCTTCTAAGGATCAGACTGTGATGGAGGAGCTGATGAAACTAGTCATTGATGGAAAAGATAGTGAAGTTACATTTGATAAGTTTCCTTATTACTTAAGTCAAAGAATCAAAATTTTGTTGACAAGTGCTGGATATTTTCATTTAAAACAACATGATTCATCCATGCACACGAGGAACCTTTCGCCAGTAACCCGAGCTATTTTACTTTCCGGACCTGCAGAATTTTATAAGGAAGAGCTTGCCAAAGCTTTAGCACATTACTTTGAATCGAAGTTACTGTTTCTAGATGTTAATTACTTCTCTTCAAAGATGCAGGCCAAATATGGATGTCCTACAAAAGAACCATATTTTAAAAGGTCCATATATGAGGCGACTCTGGAGTGTGTGTCTGGTTTATTTAGTTCCCTGTCAATCCTCCCATCAACGGGCGCAATCAGAGCTCCTTCGAAGTCCACAAGCCGCTACAGTTTTGATGAAAAACTTTTTCTAGATTCACTCTACAAGGTCTTGGTTTCTATATCAGAAACTGGATCTGTTATTTTATACATCAAGGATGTTGAGAAGATCTTTCTTCAATCACCAAGGATGTACAATTTGTTTCAACAGCTATTAAATAAACTTTCAGGATCAGTATTGGTACTCGGTTCCCGGAATTATGATTTGAAAGATAAATGTATAAAAGTTGATGAAAAACTCACTATGTTATTCCCTTACAACATTGATATCAAACCACCTCAAGATGAGGCTCATCTCAAAATCTGGAAAAGACAACTAAAAGAGGCCACAAAAAAGACTCAATTGAAAGATTACACCATCCGTGTTACTGAAGTGCTTGCAGCAAATGACCTTGATTGTGATGACTTGGATACAATCAGCCATACTGACATGATGCTACTCAGTAAGCAAACTGAAGAGATTGTGGCATCTGCAATTTTTAATCACTTGAAGGATACCAAAAATCCGGAATACCGAAATGGAATCCTAATTATACCGGCCAAGAGTTTGTGCCATGTATTGAGTCTGTTCCAGGAGGGTGAAAGTGGTGAGAAGGATAATAAGAAGACTAAAAAAGAATCAGAAAAGGACGATGCCAGAAAAGATAAACCAAAAGGGTCAAAGAAAGACAGTGATATTAAAGCTTCTGCGGAAGCAGATAGTGGTGCCGGAAAAGATAAACCAAAAGAATCAAAGGGAGACAAAGCTTCTACAAAAGCAGATAGATATTGTTCTGACATTGACTTGGAGGAGCGCATAAGACGAGAGCTTGTTCCTGCAAATGAAATAAAGGTGACTTTTTCAGATATTGGTGCATTGGATGATGTTAAAGAATCACTTCAAGAAGCGGTTATGCTTCCCCTTAGAAGACCAGATCTATTCAAATGTGGTGGGATTTTGAATCCATGTAAAGGTGTATTGCTTTTTGGACCTCCCGGTACAGGAAAAACTATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAATTTCATCAATGTCTCTTCATCCACAATCCATTCAATGTGGCACGGACAATCTGAAAAGAACGTTCGAGCTCTGTTTTCAGTAGCGGCAAAGGTTGCCCCAACTATTATTTTCATTGATGAAGTTGATAGCATGCTTGGGCAACGGTCTACAGGTTTTGAGCACAACGCAATGAGAAGGGTTAAAAATGAATTCATGTCCCGTTGGGATGGACTGTTGTCAAAACCTGATGACAGGATAATTGTTCTTGCTGCCACCAACATGCCATTTGACCTTGATGAAGCAATTATAAGACGGTTTCAGCGCAGGATCATGGTTGGTCTTCCGTCTGCTGAAAATAGGGAAACAATCTTGAAAACTCTTCTAGCTAACGAAAAACATGACGATATAGACTTCAAAGAGCTTTCAACTATGACAGAAGGATACAGTGGAAGTGATCTTAAGAACTTGTGCACGACTGCAGCATATCGCCCCCTTAAGGAGTTAATGCAACAGGAGAAGGAAAAAGAAATGCTAAGTAATAACTATTTACTTCAAAAAAACAAGAAAAAAGTGGCAGAAGCTGAAATATCAAAAGATGCTTCGAATGATACCAAAGAAGATAAAGAAGATCAAGCGATTGCCCTCGGGACTTTAAACATGAAAGATCAAGCTGAAATCTCAAAAGATGCTTCCAATGATACCGAAGAAGGTAAAGAAGATCAAGCGATTGCCCTCGGGACTTTAAACATGGAAGATCAAGCTGAAATCTCAAAAGATGCTTCCAATGCTACCGAAGAAGATAAAGAAGACCATGTGATTGCCCTCAGGCCTTTAAACATGGAAGACATGAGACAGGCAAAGAATAAGGTGGCTGCAAGTTTTGCTGCAGAAGGATCAATGATGAACAAGTTAAAGGATTGGAATAATTTGTTTGGAGAAGGAGGTTCAAGGAAGAAAGAGGAGCAGCTCAGTTATTTCTTTTAA 2631 0.3907 MEEKQILLSAALLLGLGLALGIWIDQIGILLEALSVGIGLCVGLAIWVVVGFGGDHVSNQVSSKDQTVMEELMKLVIDGKDSEVTFDKFPYYLSQRIKILLTSAGYFHLKQHDSSMHTRNLSPVTRAILLSGPAEFYKEELAKALAHYFESKLLFLDVNYFSSKMQAKYGCPTKEPYFKRSIYEATLECVSGLFSSLSILPSTGAIRAPSKSTSRYSFDEKLFLDSLYKVLVSISETGSVILYIKDVEKIFLQSPRMYNLFQQLLNKLSGSVLVLGSRNYDLKDKCIKVDEKLTMLFPYNIDIKPPQDEAHLKIWKRQLKEATKKTQLKDYTIRVTEVLAANDLDCDDLDTISHTDMMLLSKQTEEIVASAIFNHLKDTKNPEYRNGILIIPAKSLCHVLSLFQEGESGEKDNKKTKKESEKDDARKDKPKGSKKDSDIKASAEADSGAGKDKPKESKGDKASTKADRYCSDIDLEERIRRELVPANEIKVTFSDIGALDDVKESLQEAVMLPLRRPDLFKCGGILNPCKGVLLFGPPGTGKTMLAKAIANEAGANFINVSSSTIHSMWHGQSEKNVRALFSVAAKVAPTIIFIDEVDSMLGQRSTGFEHNAMRRVKNEFMSRWDGLLSKPDDRIIVLAATNMPFDLDEAIIRRFQRRIMVGLPSAENRETILKTLLANEKHDDIDFKELSTMTEGYSGSDLKNLCTTAAYRPLKELMQQEKEKEMLSNNYLLQKNKKKVAEAEISKDASNDTKEDKEDQAIALGTLNMKDQAEISKDASNDTEEGKEDQAIALGTLNMEDQAEISKDASNATEEDKEDHVIALRPLNMEDMRQAKNKVAASFAAEGSMMNKLKDWNNLFGEGGSRKKEEQLSYFF 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05096 876 Gene3D - 56 327 IPR027417 -
Trre2g05096 876 MobiDBLite consensus disorder prediction 408 464 - -
Trre2g05096 876 Coils Coil 717 737 - -
Trre2g05096 876 ProSitePatterns AAA-protein family signature. 635 654 IPR003960 GO:0005524|GO:0016887
Trre2g05096 876 Gene3D - 664 728 - -
Trre2g05096 876 Pfam ATPase family associated with various cellular activities (AAA) 532 662 IPR003959 GO:0005524|GO:0016887
Trre2g05096 876 Coils Coil 740 760 - -
Trre2g05096 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 325 IPR027417 -
Trre2g05096 876 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 490 668 - -
Trre2g05096 876 Gene3D - 490 663 IPR027417 -
Trre2g05096 876 Pfam AAA+ lid domain 684 725 IPR041569 -
Trre2g05096 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 725 IPR027417 -
Trre2g05096 876 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 69 875 - -
Trre2g05096 876 SMART AAA_5 528 665 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05096 Trre-Chr2 58373154 58379330 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05096 490 722 Calmodulin-binding Proteins AT3G56690 41.004 1.22e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05096 - - mtr:11428492 1034.63