Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05089 ATGGCTTCTTCATTATTTAGGTGTTATTGGGTTATTGTTGTTACTATGTTCTTAGGTTGTTTTTGTAAATGCATTTCAAGTGAGATTGGGTTAGGGTCAAGATTATTGGCTAGTAAAGACCAAGTTTGGGTTTCTGATAATGGTACATTTGCTATGGGATTCACTCCATCAAATACTGATAATCATTTGTTCACTTTGGGTATTTGGTTTGCTAGGCTTCCAGGAGATAGAACTTTTGTTTGGTCACCCAATAGAAACTCTCCAACATCACAAGAAGCAATTTTGGAGCTTGACACCACAGGAAACCTCATTCTCATGGACAAAAAAATCACCATATGGGCCTCAAACACCTCAAATGCTAATGTAGAATCAGCAACCATGTCAGAATCAGGCAACTTCATCCTTCACAACACAAACAATCATCCAATATGGCAGAGTTTTTCTCAACCTTCTGATACACTTCTTCCAAACCAACCTCTAACAGTTTCTTCAGAACTAACATCAGCAAAATCTTCTTCTCATGGTGGTTACTATGCTCTCAAAATGCTTCAACAACCAACTTCCTTAAGTCTTGCACTAACTTACAATCTTCCAGAAACTTACCAATCTTTGTATGAAAATGAATCATCATACACAAACTATTCTTATTGGCAAGGTCCTGAGATTTCAAATGTAACCGGTGAAGTTATCGCGGTTTTAGATCAAGCTGGAAGCTTTGGAATTGTATATGGAGATTCATCTGATGGTGCAGTTTATGTGTATAAGAATGATAATGATGATGCAGGTTTAGCTTCTGCAATTCATCAATCTACACCGCTAACCGTTCTTAGGAGACTGACACTTGAAGAGAACGGAAATCTGCGGTTGTATCGTTGGGAAGACATAAATGGATCGAAACAATGGGTGTCACAATGGGCCGCAGTTTCAAATCCATGTGATATTGGTGGAATTTGTGGTAACAGAGTTTGTAAATTGGATAGAACTAAGACAAATGCATCTTGCACTTGTTTACCAGGAACTTCTAAAGTTGGTAGAGATGGACAATGTTATGAGAATTCATCTCTTGTTGGAAAATGTACTAATGGAAAAAATGAAAATATGACATCACAGTTTAGGATTTCAACGGTGCAGCAAACTAATTACTATTTTTCTGAATCTTCAATAATAGCTAATTATAGTGAGAATGATGTTTCTTCTGTATCAAAATGTGGTGATGCATGTTTATCGGATTGTGATTGTGTTGCTTCTGTTTATGGACTAAATGAAGAAAGACCATTTTGTTGGGTGTTGAAGAGTTTAAGTTTCGGCGGTTTTGAAGATACAAGTTCTACTTTGTTTGTGAAAGTTAGAGCAAATAGTTCATGGACACCAGAAGGACAAGAAGGAAAATCTAATAGTTCTTCCGATGGAATGGGGAGTACTAAGGAAAAGGCTGTGATTATTCCTATTGTTCTAGGGATGATAGTTCTGATATTTTTACTATGTATGTTACTATATTACAGTGTTCATAGAAAAAGAACTTTGAAAAGAGAAATGGAAAGTTCAATGGCCTTATCAGGTGCTCCAATGAATTTTACTTACCGCGCTTTGCAAATCAGGACGAGCAACTTTTCGCAACTTTTAGGAACAGGTGGATTTGGAAGTGTGTATAAAGGAAGCCTAGGAGATGGTACCCTAGTGGCAGTGAAAAAACTTGATAAGATTTTGCCTCACGGAGAAAAAGAATTTATCACTGAAGTAAACACAATTGGATCAATGCATCATATGAATTTGGTTCGTTTATGCGGCTTTTGTTCTGAGGGACCACACAGGCTTTTGGTTTATGAGTACATGAAGAATGGTTCATTGGATAAATGGATCTTCCCTTCGTATCGAGGGCGAGATAGAATATTAGATTGGCAAACTCGCTTGGATATCGCCATAAATACTGCACAAGGGATTGCATACTTTCATGAGCAGTGCAGAAATAGGATCATACATTGTGACATCAAACCAGAAAATATTTTGTTAGATGAAAACTTTTGTCCTAAGGTATCTGATTTTGGACTTGCTAAATTGATGGCAAGGGAACACTCTCATGTGGTAACAATGGTTAGAGGCACTAGAGGTTATTTGGCACCAGAATGGATTAGTAATCGACCTATAACTGTAAAAGCAGATGTTTACAGCTATGGTATGCTTCTTTTAGAAATCATTGGTGGCAGGAGAAATCTCGACTTATCCTTTGATGCAGAAGATTTCTTCTATCCTGGTTGGGCTTATAAGGAGATGACAAATGGATCAACAATCAAAGTGGCAGATAGAAGATTAAATGGTGCAGTTGATGAAGAAGAGTTAATTAGAGCTTTGAAAATTGCCTTTTGGTGCATACAAGATGATGTTTCAATGAGACCACCAATGGGAGAAGTGGTGAGAATGCTAGAAGATCAATGTTCAAATAGCATAAATATAAATATGCCACCAATGCCACAAACAGTATTAGAGGTAATTGAAGAAGGGTTGGACCATGTCTACAAAGCTATGAAAAGAGAGTATAACCACTATAGTTCATTCACTATTACAAGTCATCTTACATCTCATGCCACATGTAGCAACTCCACAATGTCACCAAGATAG 2616 0.3719 MASSLFRCYWVIVVTMFLGCFCKCISSEIGLGSRLLASKDQVWVSDNGTFAMGFTPSNTDNHLFTLGIWFARLPGDRTFVWSPNRNSPTSQEAILELDTTGNLILMDKKITIWASNTSNANVESATMSESGNFILHNTNNHPIWQSFSQPSDTLLPNQPLTVSSELTSAKSSSHGGYYALKMLQQPTSLSLALTYNLPETYQSLYENESSYTNYSYWQGPEISNVTGEVIAVLDQAGSFGIVYGDSSDGAVYVYKNDNDDAGLASAIHQSTPLTVLRRLTLEENGNLRLYRWEDINGSKQWVSQWAAVSNPCDIGGICGNRVCKLDRTKTNASCTCLPGTSKVGRDGQCYENSSLVGKCTNGKNENMTSQFRISTVQQTNYYFSESSIIANYSENDVSSVSKCGDACLSDCDCVASVYGLNEERPFCWVLKSLSFGGFEDTSSTLFVKVRANSSWTPEGQEGKSNSSSDGMGSTKEKAVIIPIVLGMIVLIFLLCMLLYYSVHRKRTLKREMESSMALSGAPMNFTYRALQIRTSNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDKILPHGEKEFITEVNTIGSMHHMNLVRLCGFCSEGPHRLLVYEYMKNGSLDKWIFPSYRGRDRILDWQTRLDIAINTAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMAREHSHVVTMVRGTRGYLAPEWISNRPITVKADVYSYGMLLLEIIGGRRNLDLSFDAEDFFYPGWAYKEMTNGSTIKVADRRLNGAVDEEELIRALKIAFWCIQDDVSMRPPMGEVVRMLEDQCSNSININMPPMPQTVLEVIEEGLDHVYKAMKREYNHYSSFTITSHLTSHATCSNSTMSPR 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05089 871 Gene3D Transferase(Phosphotransferase) domain 1 611 820 - -
Trre2g05089 871 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Trre2g05089 871 Gene3D - 27 149 IPR036426 -
Trre2g05089 871 ProSitePatterns Protein kinases ATP-binding region signature. 541 564 IPR017441 GO:0005524
Trre2g05089 871 Pfam Protein kinase domain 538 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05089 871 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 152 IPR036426 -
Trre2g05089 871 ProSiteProfiles Protein kinase domain profile. 535 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05089 871 PANTHER OS07G0415500 PROTEIN 10 823 - -
Trre2g05089 871 Gene3D Phosphorylase Kinase; domain 1 499 610 - -
Trre2g05089 871 CDD STKc_IRAK 541 808 - -
Trre2g05089 871 SMART serkin_6 535 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05089 871 FunFam Serine/threonine-protein kinase 30 148 - -
Trre2g05089 871 CDD B_lectin 38 150 IPR001480 -
Trre2g05089 871 FunFam serine/threonine-protein kinase PBS1-like 503 610 - -
Trre2g05089 871 SUPERFAMILY Protein kinase-like (PK-like) 513 808 IPR011009 -
Trre2g05089 871 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Trre2g05089 871 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 611 817 - -
Trre2g05089 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672|GO:0006468
Trre2g05089 871 Pfam D-mannose binding lectin 78 165 IPR001480 -
Trre2g05089 871 PIRSF SRK 1 861 IPR024171 GO:0004674
Trre2g05089 871 SMART blect_4 34 150 IPR001480 -
Trre2g05089 871 Pfam S-locus glycoprotein domain 259 339 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05089 Trre-Chr2 58309579 58313425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05089 506 821 Receptor kinase-like Gene Family AT5G20050 44.242 3.60e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre2g05089 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05089 - - tpra:123904109 1682.54