Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05052 ATGGATTTACTTGAAGGCGTCGGAGAGAGTTCATCGCCACCGCGTTCATTCGGTGGTTATAGCAACTACGATATAAGGACCGATGTTTATAACCGTTTGGTTGAAACCGGTCACGATCAAGCCGTATCAAATCCAGATTTCCGTGAACAGATTGAAGCTCATTTCAATCGTTTGCCTCCAAGTTATGGACTTGATGTTAATGTTGATAGAGCTGAAGATGTTTTACTTCATAGAAGTCTTCTTGATTTGGCAAGAGATCCGGATAAGCGTCCCGTTTACCATATTCGCCTCTTAGAGAATATTTCTACTAGGACGGATGGTGAAGATCAACAAATTGGAAGTTCGCACACTAGCCCCGAAGCCGAGACATCTTCTCATGCAGCAAATGGGGGAGTCATAGCATCTCTTAAGAGGACAAGAGATCTGGCAATTGAGTTTGAGTCTTGCTCGAAGCTGGAGGACCTAAATTTGGATGTTATAAAGAACTCCAAGGAGACACAGGAAAAACTTGTAACAGACAGCTTTTCTCAGAGGCATGAACATTCAAGTGTCCCAGTTCATGAAATAATATTTTCTGCTGTTGACAAACCAAAGCTTTTAAGTCAGCTGTCCGCTTTGCTGTCTGATATCGGGCTTAACATCCGGGAAGCACATGTATTTTCCACAACTGATGGCTACTCCCTCGATGTTTTTGTGGTAGATGGATGGCCACTAGAGGAAACCAATGGTTTGTATGCTGCTATGGAAAAAGCTGTAGCAAGGAGTGAGGGGTCATGGTCTCATTCTTCAAATTCTCATTCAGCTGTGGCAAAAGCCTTAGCAGCAGAAGGAAAATCTGGAGACTGGGAAATAGACAGGAGATCGTTAAAGATAGGAGAAAAAATAGCATCTGGATCCTGTGGAGATTTGTATCATGGAGTTTATCTTGGTGAAGATGTTGCTGTTAAGGTTCTGAAATCCGAGCAACTGAATGATGCCTTAGAGGATGAGTTTACTCAAGAAGTAGCAATTTTAAGACAGGTGCGTCATAAAAATGTTGTTCGTTTCATTGGTGCTTGCACAAAGTGTCCACATTTGTGCATAGTAACAGAGTATATGACTGGGGGAAGTCTATATGATTACTTGCACAAAAATCGTAATGTCTTGGAGCTGTCTCAATTACTGAAGTTTGCAATTGATGTCTGCAAGGGAATGGAGTATTTGCATGGAAACAACATAATTCACAGGGATCTGAAGACAGCCAATTTGCTGATGGATGCACACAATGTTGTAAAAGTGGCAGATTTTGGAGTTGCCAGATTCCTAATTCAGGGGGGAGTGATGACTGCAGAAACTGGAACATATAGATGGATGGCACCAGAGGTCATAAACCACCAGCCTTATGATCAGAAGGCAGATGTGTTCAGCTTTTCCATAGTACTATGGGAACTAGTGACAGCAAAGGTACCATATGATACCATGACTCCACTACAAGCTGCTTTGGGTGTGAGACAGGGACTGCGACCAGAACTGCCAAAGCATGGGCACCCTAAACTATTAGATTTGATGCAAAGATGTTGGGAAGCTGTTCCAAGCAGTCGTCCATCCTTCAATGAGATAAGAGTTGAACTTGAAAATCTTTTGCTTGAAGTGGAGAATAGTTCAGAAACTAATGGTGCTTAA 1662 0.4236 MDLLEGVGESSSPPRSFGGYSNYDIRTDVYNRLVETGHDQAVSNPDFREQIEAHFNRLPPSYGLDVNVDRAEDVLLHRSLLDLARDPDKRPVYHIRLLENISTRTDGEDQQIGSSHTSPEAETSSHAANGGVIASLKRTRDLAIEFESCSKLEDLNLDVIKNSKETQEKLVTDSFSQRHEHSSVPVHEIIFSAVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPLEETNGLYAAMEKAVARSEGSWSHSSNSHSAVAKALAAEGKSGDWEIDRRSLKIGEKIASGSCGDLYHGVYLGEDVAVKVLKSEQLNDALEDEFTQEVAILRQVRHKNVVRFIGACTKCPHLCIVTEYMTGGSLYDYLHKNRNVLELSQLLKFAIDVCKGMEYLHGNNIIHRDLKTANLLMDAHNVVKVADFGVARFLIQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTAKVPYDTMTPLQAALGVRQGLRPELPKHGHPKLLDLMQRCWEAVPSSRPSFNEIRVELENLLLEVENSSETNGA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05052 553 CDD STKc_MAP3K-like 295 533 - -
Trre2g05052 553 Gene3D Phosphorylase Kinase; domain 1 278 367 - -
Trre2g05052 553 Pfam ACT domain 187 234 IPR002912 -
Trre2g05052 553 SUPERFAMILY ACT-like 187 255 IPR045865 -
Trre2g05052 553 Coils Coil 530 550 - -
Trre2g05052 553 ProSiteProfiles Protein kinase domain profile. 289 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05052 553 MobiDBLite consensus disorder prediction 105 129 - -
Trre2g05052 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Trre2g05052 553 PRINTS Tyrosine kinase catalytic domain signature 446 456 IPR001245 GO:0004672|GO:0006468
Trre2g05052 553 PRINTS Tyrosine kinase catalytic domain signature 465 487 IPR001245 GO:0004672|GO:0006468
Trre2g05052 553 PRINTS Tyrosine kinase catalytic domain signature 508 530 IPR001245 GO:0004672|GO:0006468
Trre2g05052 553 PRINTS Tyrosine kinase catalytic domain signature 400 418 IPR001245 GO:0004672|GO:0006468
Trre2g05052 553 PRINTS Tyrosine kinase catalytic domain signature 363 376 IPR001245 GO:0004672|GO:0006468
Trre2g05052 553 Gene3D Transferase(Phosphotransferase) domain 1 368 552 - -
Trre2g05052 553 ProSiteProfiles ACT domain profile. 188 260 IPR002912 -
Trre2g05052 553 SMART serkin_6 289 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05052 553 FunFam Serine/threonine-protein kinase isoform 1 279 367 - -
Trre2g05052 553 Pfam Protein tyrosine and serine/threonine kinase 289 536 IPR001245 GO:0004672|GO:0006468
Trre2g05052 553 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 138 545 - -
Trre2g05052 553 SUPERFAMILY Protein kinase-like (PK-like) 281 542 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05052 Trre-Chr2 57976201 57991274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05052 24 544 MAP Kinase Kinase Kinase AT2G17700 50.936 0.0 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre2g05052 PK_Tyr_Ser-Thr 3.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05052 - - gmx:100797987 923.694