Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05047 ATGACATTGATTCATGATGCAAGAGAAGAAAAACATGAAAACATTCAAGAAAACATTAATAGTCTTACCAACCTTGCAATCACCCAATGCATTGGCGAAACAGACGCCAATTTAAATGCACAAATTACTCGCTATGTGGATACTATAACCAAGAACAACTTACGTAACTTAGGTTACCCCACTAATCAAGACTTCAATTATGATGCATTGGCACCATTAATGGTTCATTTTCATTTGAACAATGCTGGAGATCCATTTCTTGGAAGCAGTTTCTCTCTAAATTCAATGACATTTGAAGTTTGTGTGCTTGATTGGTTTGCTAAACTATGGGAGATAGAGAAGAATGAATATTGGGGATACGTCACATCTGGTGGAACCGAAGGCAATCTTCATGGAATTTTAGTAGGGAGAGAAAAATTTCCAGATGGAATTCTATATACTTCAGAAGATTCACATTATTCAATACCCAAAATAGCAAGAATGTATCGAATGCAATGTGTGAAGGTTGGCTCTTTGATCTCTGGTGAAATTGATTGTGTTGAATTCGAGGCTTCTCTACTTGCTAACAAGGACAAACCAGCCATCATCAATTTAAACATAGGGACAACGCTGAAAGGAGCTATTGATGATATTGATCTTGTAATTGAAACACTTTACAAATGTGGTTTTACTCGTGATCGATTCTACATTCATTGCGACGGTGCTCTATTTGGAATCATGTTGCCTTTTATCGATCAAGCTCCAAGGATTAGCTTCAAGAAACCTATCGACAGTGTAGCTATTTCAGGTCATAAGTTTTTGGGATGTCCTTCACCTTGTGGTGTTTTGATAACTCGTTTAAAATACATTGATGCCCTCTCGAGAGAATGTGGCATCATTGCTTCAAGGGATGCTACAATCACAGGCAGCCGTAGCGGGCATTCTCCGATCTTAATGTGGTATGCTCTAAAAAAAAATGGTTTAATAGGACTTGGAAATGAAGTGAATAATTGCATGATGAAATCACGTTACTTACTAAACAAACTACGTGATGCTGGAATTGGTGCAATGTTAAATGAGTTTAGCAACATAGTTGTATTTGAGAGGCCCCATGATGATCAATTTACTCGTAGATGGAATTTGGCTAGCAATGAAAATATTGCACATGTGGTAGTGTTGAAGCATGTTACTACTGAAATTCTTGACACATTTGTTAGTGAATTTGTCCAAAAACGATTGATTTGGTTTAAATATGGACAATTTCAGCCTCTATGCATTGCAAAAGATGTTGGTTCTACAAATTGTGCTTGTTCGGTACACAACTTATCTGGAAATTATCAGCTAAATTGTATGTGA 1335 0.3678 MTLIHDAREEKHENIQENINSLTNLAITQCIGETDANLNAQITRYVDTITKNNLRNLGYPTNQDFNYDALAPLMVHFHLNNAGDPFLGSSFSLNSMTFEVCVLDWFAKLWEIEKNEYWGYVTSGGTEGNLHGILVGREKFPDGILYTSEDSHYSIPKIARMYRMQCVKVGSLISGEIDCVEFEASLLANKDKPAIINLNIGTTLKGAIDDIDLVIETLYKCGFTRDRFYIHCDGALFGIMLPFIDQAPRISFKKPIDSVAISGHKFLGCPSPCGVLITRLKYIDALSRECGIIASRDATITGSRSGHSPILMWYALKKNGLIGLGNEVNNCMMKSRYLLNKLRDAGIGAMLNEFSNIVVFERPHDDQFTRRWNLASNENIAHVVVLKHVTTEILDTFVSEFVQKRLIWFKYGQFQPLCIAKDVGSTNCACSVHNLSGNYQLNCM 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05047 444 Pfam Pyridoxal-dependent decarboxylase conserved domain 95 347 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre2g05047 444 Gene3D Aspartate Aminotransferase, domain 1 317 405 IPR015422 GO:0003824
Trre2g05047 444 Coils Coil 5 25 - -
Trre2g05047 444 Gene3D - 71 316 IPR015421 GO:0003824
Trre2g05047 444 PANTHER - 13 434 - -
Trre2g05047 444 SUPERFAMILY PLP-dependent transferases 57 402 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05047 Trre-Chr2 57947965 57950400 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05047 200 346 Calmodulin-binding Proteins AT2G02010 26.923 2.91e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05047 K25193 - gmx:100781665 651.744