Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05046 ATGGCTAGACAAGGAATCAACATAGCAATGAAATTGATTCATGATGCAAGAGAAGAAAAACATGAAAACATTCAAGAAAACATTAATAGTCTTACCAACCTTGCAATCACCCAATGCATTGGCGAAACAGACGCCAATTTAAATGCACAAATTACTCGCTATGTGGATACTATAACCAAGAACAACTTACGTAACTTAGGTTACCCCACTAATCAAGACTTCAATTATGATGCATTGGCACCATTAATGGTTCATTTTCATTTGAACAATGCTGGAGATCCATTTCTTGGAAGCAGTTTCTCTCTAAATTCAATGACATTTGAAGTTTGTGTGCTTGATTGGTTTGCTAAACTATGGGAGATAGAGAAGAATGAATATTGGGGATACGTCACATCTGGTGGAACCGAAGGCAATCTTCATGGAATTTTAGTAGGGAGAGAAAAATTTCCAGATGGAATTCTATATACTTCAGAAGATTCACATTATTCAATACCCAAAATAGCAAGAATGTATCGAATGCAATGTGTGAAGGTTGGCTCTTTGATCTCTGGTGAAATTGATTGTGTTGAATTCGAGGCTTCTCTACTTGCTAACAAGGACAAACCAGCCATCATCAATTTAAACATAGGGACAACGCTGAAAGGAGCTATTGATGATATTGATCTTGTAATTGAAACACTTTACAAATGTGGTTTTACTCGTGATCGATTCTACATTCATTGCGACGGTGCTCTATTTGGAATCATGTTGCCTTTTATCGATCAAGCTCCAAGGATTAGCTTCAAGAAACCTATCGACAGTGTAGCTATTTCAGGTCATAAGTTTTTGGGATGTCCTTCACCTTGTGGTGTTTTGATAACTCGTTTAAAATACATTGATGCCCTCTCGAGAGAATGTGGCATCATTGCTTCAAGGGATGCTACAATCACAGGCAGCCGTAGCGGGCATTCTCCGATCTTAATGTGGTATGCTCTAAAAAAAAATGGTTTAATAGGACTTGGAAATGAAGTGAATAATTGCATGATGAAATCACGTTACTTACTAAACAAACTACGTGATGCTGGAATTGGTGCAATGTTAAATGAGTTTAGCAACATAGTTGTATTTGAGAGGCCCCATGATGATCAATTTACTCGTAGATGGAATTTGGCTAGCAATGAAAATATTGCACATGTGGTAGTGTTGAAGCATGTTACTACTGAAATTCTTGACACATTTGTTAGTGAATTTGTCCAAAAACGATTGATTTGGTTTAAATATGGACAATTTCAGCCTCTATGCATTGCAAAAGATGTTGGTTCTACAAATTGTGCTTGTTCGGTACACAACTTATCTGGAAATTATCAGCTAAATTGTATGTGA 1362 0.3678 MARQGINIAMKLIHDAREEKHENIQENINSLTNLAITQCIGETDANLNAQITRYVDTITKNNLRNLGYPTNQDFNYDALAPLMVHFHLNNAGDPFLGSSFSLNSMTFEVCVLDWFAKLWEIEKNEYWGYVTSGGTEGNLHGILVGREKFPDGILYTSEDSHYSIPKIARMYRMQCVKVGSLISGEIDCVEFEASLLANKDKPAIINLNIGTTLKGAIDDIDLVIETLYKCGFTRDRFYIHCDGALFGIMLPFIDQAPRISFKKPIDSVAISGHKFLGCPSPCGVLITRLKYIDALSRECGIIASRDATITGSRSGHSPILMWYALKKNGLIGLGNEVNNCMMKSRYLLNKLRDAGIGAMLNEFSNIVVFERPHDDQFTRRWNLASNENIAHVVVLKHVTTEILDTFVSEFVQKRLIWFKYGQFQPLCIAKDVGSTNCACSVHNLSGNYQLNCM 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05046 453 PANTHER - 19 443 - -
Trre2g05046 453 Gene3D - 80 325 IPR015421 GO:0003824
Trre2g05046 453 Pfam Pyridoxal-dependent decarboxylase conserved domain 104 356 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre2g05046 453 Gene3D Aspartate Aminotransferase, domain 1 326 414 IPR015422 GO:0003824
Trre2g05046 453 SUPERFAMILY PLP-dependent transferases 66 411 IPR015424 -
Trre2g05046 453 Coils Coil 14 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05046 Trre-Chr2 57924889 57927354 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05046 209 355 Calmodulin-binding Proteins AT2G02010 26.923 2.93e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05046 K25193 - gmx:100781665 652.899