Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05041 ATGAGTGACTCTTTAATCACCGGTGAAATTGATTGTGTTGAACTAGAGGCTTCTCTACTTGCCAACAAGGATAAACCGGCCATCATCAATCTAAACATAGGGACAACTTTGAAAGGAGGTATTGATGATATTGATCTCGTAATACAAACACTTTACAAGTGTGGTTTTACTCGTGATCGATTCTATATTCATTGTGACAGTGCTCTATTTGGAATCATATTGCCTTTTATCAAACAAGCTCCACGGATTAGCTTCAAGAAACCTATCGATAGTGTAACTATTTCAGGTCATAAATTTTTGGGATGTCCTTCGCCTTGCGGTGTTATAATAACTCGTTTGAAATACATCGACGCACTATCTAGAGATGTTGAATACATTGCTTCAAGGGATGCAACAATCACGGGTAGCCGTAGCCGTAGCGGACATGCTCCAATATTTCTTTGGTATGCTCTCACAAAAAGGGGTTTAATAGGACTTGAAAATGAAGTTCATAATTGCTTATTGAAATCACGTTACTTACTAAATCTACTACGTGATGCTGGAATTGGTGCAATGTTAAACGAATTTAGCAACATAGTTGTTTTTGAGAGACCCCTAGATGATCAATTTACCCATAGATGGAATTTGGCAAGCAATAAAAATATTGCACATGTGGTAGTATTGCAACATGTTACTATTGAAATGCTTGACACATTTGTTCGTAAGTTTGTCCAAAAACGATTGATTTGGTCAAAAGATGGACAGCAGTTTCATCCTCTATGCATTGCAAATGATGTTGGTTCTAGAAACTGTGCTTGTTCGATGCATAATGTATCGATAAATATTTATTAG 831 0.367 MSDSLITGEIDCVELEASLLANKDKPAIINLNIGTTLKGGIDDIDLVIQTLYKCGFTRDRFYIHCDSALFGIILPFIKQAPRISFKKPIDSVTISGHKFLGCPSPCGVIITRLKYIDALSRDVEYIASRDATITGSRSRSGHAPIFLWYALTKRGLIGLENEVHNCLLKSRYLLNLLRDAGIGAMLNEFSNIVVFERPLDDQFTHRWNLASNKNIAHVVVLQHVTIEMLDTFVRKFVQKRLIWSKDGQQFHPLCIANDVGSRNCACSMHNVSINIY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05041 276 Pfam Pyridoxal-dependent decarboxylase conserved domain 13 182 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre2g05041 276 Gene3D Aspartate Aminotransferase, domain 1 152 240 IPR015422 GO:0003824
Trre2g05041 276 PANTHER - 3 270 - -
Trre2g05041 276 Gene3D - 2 151 IPR015421 GO:0003824
Trre2g05041 276 SUPERFAMILY PLP-dependent transferases 7 237 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05041 Trre-Chr2 57887340 57889755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05041 33 166 Calmodulin-binding Proteins AT2G02000 29.078 7.05e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05041 K25193 - gmx:100781665 405.986