Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05040 ATGACTATGATTCATGATGCCAAAGTTTTAAAAGAAGAATTGAGACATGAAAATATTCATGAACAAAACAATATCATTAGTCTTACAAACCTCGCTATCACGCAATGCATTGGCGAAACAAATACCAATTTGGATGTAATAATTACTCGTTATGCGGATACTATAAATAATTACAACATGCGCAACTTAGGTTATCCCACAAATCAAAACTTCAATTATAGTGCGTTAGCACCATTGTTTAATTTTCATTTGAACAATGCTGGAGATCCATTTCTTGGAAGCAGTTTCTCTCTAAATTCAATGCCATTTGAAGTTAACGTGCTTGATTGGTTCGCTAAACAATGGGAGATAGAGAAGAATGATTATTGGGGATACGTCACGACTGGTGGAACCGAAGGCAATCTTCATGGAATTTTAGTAGGGAGAGAACAATTTCCAGATGGAATTCTATATACCTCAGAAGATTCACATTATTCAATATCTAAAATAGCAAGAATGTATCGAATGCAATGTGTGAAGGTATGGACAACTTTAAAAGGAGGTATTGATGATATTGATCTTGTAATACAAACACTTTACAAATGTGGTTTTACTCGTGATCAATTCTACATTCATTGTGACAGTGCTTTATTTGGAATCATGTTACCTTTTATCGAACAAGCTCCAAGGATTAGCTTCAAGAAACCTATCGACAGTGTAACTATTTCAGGTCATAAGTTTTTGGGATGTCCTTCGCCTTGCGGTGTTATAATAGCTCGTTTGAAATACATCGACGCACTATCTAGAGATGTTGAATACATTGCTTCAAGGGATGCAACAATCACGGGTAGCCGTAGCGGACATGCTCCAATATTTCTTTGGTATGCTCTCACAAAAAGGGGTTTAATAGGACTTGAAAATGAAGTTCATAATTGCTTATTGAAATCACGTTACTTACTAAATCTACTACGTGATGCTGGAATTGGTGCAATGTTAAACGAATTTAGCAACATAGTTGTTTTTGAGAGACCCCTAGATGATCATTTTACTCATAGATGGAATTTGGCAAGCAATAAAAATATTGCACATGTGGTAGTATTGCAACATGTTACTATTGAAATGCTTGACACATTTGTTCTTGAGTTTGTCCAAAAACGATTGATTTGGTCTAAAGATGGACAACAGTTTCAACCTCTATGCATTGCAAACGATGTTGGTGCTAGAAATTGTGCTTGTTCGATGCATAATGTATTGAGAATATTTATTAGCTAA 1251 0.3517 MTMIHDAKVLKEELRHENIHEQNNIISLTNLAITQCIGETNTNLDVIITRYADTINNYNMRNLGYPTNQNFNYSALAPLFNFHLNNAGDPFLGSSFSLNSMPFEVNVLDWFAKQWEIEKNDYWGYVTTGGTEGNLHGILVGREQFPDGILYTSEDSHYSISKIARMYRMQCVKVWTTLKGGIDDIDLVIQTLYKCGFTRDQFYIHCDSALFGIMLPFIEQAPRISFKKPIDSVTISGHKFLGCPSPCGVIIARLKYIDALSRDVEYIASRDATITGSRSGHAPIFLWYALTKRGLIGLENEVHNCLLKSRYLLNLLRDAGIGAMLNEFSNIVVFERPLDDHFTHRWNLASNKNIAHVVVLQHVTIEMLDTFVLEFVQKRLIWSKDGQQFQPLCIANDVGARNCACSMHNVLRIFIS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05040 416 Gene3D - 175 290 IPR015421 GO:0003824
Trre2g05040 416 Gene3D - 92 174 IPR015421 GO:0003824
Trre2g05040 416 Gene3D Aspartate Aminotransferase, domain 1 291 379 IPR015422 GO:0003824
Trre2g05040 416 Pfam Pyridoxal-dependent decarboxylase conserved domain 176 321 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre2g05040 416 SUPERFAMILY PLP-dependent transferases 52 373 IPR015424 -
Trre2g05040 416 PANTHER - 173 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05040 Trre-Chr2 57880195 57884141 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05040 176 344 Calmodulin-binding Proteins AT2G02010 24.719 2.65e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05040 K25193 - gmx:100781665 592.423