Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05037 ATGGTGTCCGGATCTGGAGTCTGCGCAAAGAGAGTCGTGATCGATGCTCGTCACCACATGCTCGGCCGCCTTGCATCCATTGTAGCAAAGGAGCTTCTCAATGGTCAGAAGGTCGTTCTTGTTAGATGTGAAGAAATTTGCATTTCCGGTGGACTCGTTAGACAGAAAATGAAATACATGCGTTTCCTTCGTAAGCGTATGAACACTAAACCTTCTCATGGTCCTATTCATTTTCGTGCTCCTTCCAAAATCTTCTGGCGCACTGTTCGTGGGTTAGTAATCAGCTTAATTACCCTGTTTATGATTTAA 309 0.4466 MVSGSGVCAKRVVIDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGLVISLITLFMI 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05037 102 Gene3D Ribosomal protein L13 7 96 IPR036899 GO:0003735|GO:0005840|GO:0006412
Trre2g05037 102 CDD Ribosomal_L13 12 91 IPR005822 GO:0003735|GO:0005840|GO:0006412
Trre2g05037 102 Pfam Ribosomal protein L13 10 92 IPR005822 GO:0003735|GO:0005840|GO:0006412
Trre2g05037 102 SUPERFAMILY Ribosomal protein L13 12 92 IPR036899 GO:0003735|GO:0005840|GO:0006412
Trre2g05037 102 PIRSF RPL13p_RPL13Aa_RPL16e_RPL13o 1 93 IPR005822 GO:0003735|GO:0005840|GO:0006412
Trre2g05037 102 PANTHER RIBOSOMAL PROTEIN L13 1 92 IPR005822 GO:0003735|GO:0005840|GO:0006412
Trre2g05037 102 NCBIfam 50S ribosomal protein L13 12 93 IPR005755 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05037 Trre-Chr2 57812373 57812681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05037 1 93 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 91.398 2.63e-62 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05037 K02872 - thj:104822501 186.422