Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05036 ATGGCATCCAATAATTCATCCATCAACAACCAAACAAAATGTGTACATCAAATTAATAACAATGAACAACATGAAACACTGGAGATTGAAAGCAATGAATTTGATTACTCAAAAAGATCACAATGGCTTCGCGCCGCAGTTTTAGGAGCTAATGATGGATTAGTTTCAACAGCATCACTAATGATGGGTGTAGGAGCAGTAAAACAAGACATAAAAGCCATGATCTTGTCAGGTTTTGCTGGACTTGTAGCTGGTGCTTGTAGCATGGCAATAGGTGAGTTTGTTTCTGTTTATTCACAACTTGACATTGAAATTGCACAATTAAAAAGAGAAAAAAATATTGAAAGAGGTGATAATATTGAAGAAGAAGATGTTATTGAGAGAGAAAGTTTGCCAAATCCTTTACAAGCAGCAGCAGCTTCAGCTTTAGCATTTTCAATTGGTGCAATAGTGCCACTTCTTGCAGCATCTTTTATTAAAGATTATAAGGAACGGATTCACATGATGGCAAGGGTAGGCTTCAGCCCTTCCTTCCCACCATTTCTAATCTGTATACATTATTGA 564 0.3652 MASNNSSINNQTKCVHQINNNEQHETLEIESNEFDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILSGFAGLVAGACSMAIGEFVSVYSQLDIEIAQLKREKNIERGDNIEEEDVIERESLPNPLQAAAASALAFSIGAIVPLLAASFIKDYKERIHMMARVGFSPSFPPFLICIHY 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05036 187 Coils Coil 187 187 - -
Trre2g05036 187 Pfam VIT family 43 123 IPR008217 GO:0005384|GO:0030026
Trre2g05036 187 CDD Nodulin-21 41 166 - -
Trre2g05036 187 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 20 169 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05036 Trre-Chr2 57799414 57800517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05036 19 169 Nodulin-like Gene Family AT3G43660 65.563 1.45e-67 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05036 K22736 - gmx:100814343 234.572