Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05035 ATGGGGAAAAAGAAGCCATCAATTCGCGACGACGAGAATCCTCCGCAACAAGGCGGCGGTGGGAAATCGAAAAAGAAGGCTCCGATTATCGATGACGATGAGTATTCTATCGGAACTGAGCTTTCGGAGGAAACTGCCGCTCCGGCGGTAGTGGACGAGAAACCTGGGAAAAAGAAAGGTAAGAAAGGTAAATCTTCTGCTAAAGATAATGGTGATGATTTTGATGATGTTGATGATGATGTGTCTGAAATTGTTTTTGCTGGGAAGAAAAAGGGGAAATCGAAAAAAAGTGGTGGGGGGAGTGTGTTTAGTGCTGCTGGTGGATTTGGTTTGCTCGGGGATGAGGAAGATGGTGATAAGGATGATGATGAGGAGGAGAAATCGGAGATAACCAGTGAAGGAGATGGCGATGAGGATGATGAACCGATTGTTTTTACTGGGAAGAAGAAGAAGTCCTCGAAGGGTGCGAATAAAGGAGGAGGTAGTTTGTTTAGTGCATTAGATGAGATTGATGATGGAGATGAGGAGAATAAGGATGAAAAGGCGGAAGATGATGATGATGAAGATATAGGACCGATCACTTTCTCGGGGAAGAAAAAGAAACCGTCTAAGTCTAAGAAGGCGGGTACAGCTATTCCGGATGAGGATAGTGTTTCTGTATTGGAGTCTGCTAAAGGTGGCGATGAAAATGACGAGGATGATGTTTCTTTTGCGTTTACCGGTAAAAAGAAATCTTCTAAAAAGAAGAGTGGTAGTGCTGCTGCCAAAGTGAGTGATGAAATTATCGATGCTGTTGAGGCTGAGAAGCCTAGTGTTGGAGAAGTGAGTAATGCTAATGTTGACAATGGTAATATAAGTAAGAGTGAAGAGGTCGTTGGAACTTCTAAAAATAAGAAGAAGAATAAGAAGAAGGGTGGGAGGACAAAAGAAGAGGAGGACGATTTAGATAAGATTCTTGCAGAGCTTGGTGAAGCCCCTCCTCCGGCAAAACCCGTTGCTCCTCCGCAGCAGGATGATAAAGTTCAGCCTGCTCCTGAAGTTGTTTCTGCTGCTGGTGCTTCAGTGGAAAAGGAGGGAGAAGAGGAGACTGTAGAATCAGCTGCTGCAAAAAAGAAGAAAAAGAAGAAGGAAAAGGAAAAGGAGAAGAAGGCAGCAGCAGCAGCCGGAAGTGCACCGGTTATTGAAACTGTAGAAGAGAAAGTTGAGATAAGTGAACCAAAGAAAATTGATTCGAAGACGAACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAATTATTGGCTCGAAGACAAGAGGCTGAAGAGAGAAAGAAAAGAGAAGAGGAAGAGAAGCTAAGGAAAGAAGAAGAGGAGCGACAAAGGCTAGAGGAACTTGAGAGACAGGCAGAAGAGGCTAAACGTATAAAGAAGGAAAAAGAAAAGGAAAAACTCTTGAGAAAGAAGCTTGAAGGTAAATTGTTAACTGCTAAGCAGAAAGAAGAAGCCCGGCGTTTGGAGGCAATGAGGAGGCAGATTCTGAATAGCACAGGGGGTGTGACTCTTCCTTCTGGAGACACTGGTGCACCAGCCAAAAAACCCATTTATCAGACAAAGAAGGGGAAATCAACTAATCAAAATCATAATGGTGCCGCTGCTGTTAAGACAGATGAAAGCGCTGAAGCAAAGGAAACTACCGCTGATTTAGATTTGGAGGAACCGGAAAAGATTGAAGAAGTGGAGTCAGTGCAGATGGAGGACAAAGTTGAACTTCCTGAAGCTGTTGAAGAGGATGCAGTGGAAGAAGATGACGATGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTCAATCTGAATGATAGGGGTGCATTTGCTGATGAAGAAGTTGACTCCGAGCCTGAACTGATTGTCAAAAAAGAGATTAGAAATGTACCTGCTAAAAATGCTGGTGCTACAAGTAAAACTGTTTCGAAGCCCGTGGCTGAAGAAATTGAAGATAGAAAACAGGCCAAAGTTGTGGTTGAGGACAAAAAGAAAAGGCACGATCCACAACAGTCTGCTGTGCCTCCTAAGCCGAGTGAGGGGAACCTCCGATCGCCAATTTGCTGCATCATGGGTCACGTTGACACTGGAAAAACCAAGCTTCTGGACTGTATTCGAGGTACCAATGTTCAAGAAGGTGAGGCTGGTGGTATCACCCAACAGATTGGTGCAACATACTTTCCTGCTCATAACATACGTGAAAGAACTAAGGAACTGAAAGCAGATGCAACGCTGAAAGTTCCCGGTCTACTGGTTATCGATACCCCAGGCCACGAATCGTTCAATAACTTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACTATAGAGTCACTCAATCTATTAAAAATGAGGAACACAGAATTCATTATTGCATTGAATAAGGTTGACAGGCTTTATGGCTGGAAAACATGTCGCAATGCTCCAATTCGTAAAGCCATGTTGCAGCAGTCTAAGGATGTTCTAAATGAGTTTAATATGCGAGTCACTCAGATTGTTACCCAGTTCAAGGAACAAGGTCTAAATACTGAATTGTATTATAAAAACAAGGAAATGGGAGAAACATTCAGCATTGTTCCTACAAGTGCACTAAGTGGTGAAGGAATCCCAGATATGTTATTACTATTGGTTCAGTGGACCCAAAAAACTATGACTGAAAAACTTACGTACAGTGAAGAAGTGCAGTGTACTGTTTTGGAAGTCAAGGTTATTGAAGGTCATGGAACTACTATTGATGTTGTTTTAGTTAACGGCGTTCTTCATGAAGGAGATCAAATTGTTGTATCTGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGTTCATATATCCATCACAAAGAAATCAAGGCTGCGATGGGCATCAAAATCACTGCCCAGGGACTTGAACATGCTATTGCTGGTGCAAGTTTATATGTGGTGAAGCCTGATGATGATTTGGAATGTATTAAAAAGGCGGCCGTGGAAGACGTGGAGTCAGTCTTGAGCAGGATTGACAGGGGTGGTGAGGGCGTTTGTGTCCAGGCATCTACCCTTGGCTCATTGGAAGCATTACTGGAGTTTTTGAAAACTCCAGAAGTGAACATTCCTGTTAGTTCTATAAACATAGGCCCTGTACATAAGAAGGATGTGATGAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATTCTACTATATTGGCATTTGATGTGAAAGTCACCCCTGAAGCTAGGGAACTTGCAGATGAATTGGGTGTAAAAATTTTTATTGCCGATATCATTTATCATTTATTTGATCAATTTAAGGCTTACATGGACAACATTAAGGAGGAGAAAAAGAAAGAATCTGCTGATGAGGCAGTCTTCCCATGTGTTCTGAAGATCTTACCAAATTGCGTCTTCAACAAGAAGGATCCGATTGTTTTGGGAGTTGACATCCTTGAAGGCATTTTGAAGATTGGAACTCCAATTTGTATTCCTTCCCAAGAGTTCATTGATATTGGTCGCATTGCCTCCATCGAGAATAATCATAAACCTGTTGATTATGCGAAGAAAGGACAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAGGAACAGCAGAAAATGTTCGGGAGGCATTTTGAGATTGATGATGAGCTTGTAAGCCATATTTCGCGGAGATCTATTGATATTCTCAAATCTAATTATCGGGATGACCTGTCTATGGAGGAATGGAAGCTGGTGGTGAAATTGAAGAGTCTTTTCAAGATACAATGA 3852 0.4239 MGKKKPSIRDDENPPQQGGGGKSKKKAPIIDDDEYSIGTELSEETAAPAVVDEKPGKKKGKKGKSSAKDNGDDFDDVDDDVSEIVFAGKKKGKSKKSGGGSVFSAAGGFGLLGDEEDGDKDDDEEEKSEITSEGDGDEDDEPIVFTGKKKKSSKGANKGGGSLFSALDEIDDGDEENKDEKAEDDDDEDIGPITFSGKKKKPSKSKKAGTAIPDEDSVSVLESAKGGDENDEDDVSFAFTGKKKSSKKKSGSAAAKVSDEIIDAVEAEKPSVGEVSNANVDNGNISKSEEVVGTSKNKKKNKKKGGRTKEEEDDLDKILAELGEAPPPAKPVAPPQQDDKVQPAPEVVSAAGASVEKEGEEETVESAAAKKKKKKKEKEKEKKAAAAAGSAPVIETVEEKVEISEPKKIDSKTNKKVPKHVREMQELLARRQEAEERKKREEEEKLRKEEEERQRLEELERQAEEAKRIKKEKEKEKLLRKKLEGKLLTAKQKEEARRLEAMRRQILNSTGGVTLPSGDTGAPAKKPIYQTKKGKSTNQNHNGAAAVKTDESAEAKETTADLDLEEPEKIEEVESVQMEDKVELPEAVEEDAVEEDDDEDEWDAKSWDDVNLNDRGAFADEEVDSEPELIVKKEIRNVPAKNAGATSKTVSKPVAEEIEDRKQAKVVVEDKKKRHDPQQSAVPPKPSEGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAHNIRERTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIIALNKVDRLYGWKTCRNAPIRKAMLQQSKDVLNEFNMRVTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSALSGEGIPDMLLLLVQWTQKTMTEKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVSGMQGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLECIKKAAVEDVESVLSRIDRGGEGVCVQASTLGSLEALLEFLKTPEVNIPVSSINIGPVHKKDVMKASVMLEKKREYSTILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYMDNIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQEFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKSNYRDDLSMEEWKLVVKLKSLFKIQ 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05035 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 982 IPR027417 -
Trre2g05035 1283 FunFam Eukaryotic translation initiation factor 5B 685 913 - -
Trre2g05035 1283 MobiDBLite consensus disorder prediction 644 690 - -
Trre2g05035 1283 MobiDBLite consensus disorder prediction 115 140 - -
Trre2g05035 1283 MobiDBLite consensus disorder prediction 50 71 - -
Trre2g05035 1283 CDD IF2_eIF5B 694 904 - -
Trre2g05035 1283 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1017 1145 IPR036925 -
Trre2g05035 1283 FunFam Eukaryotic translation initiation factor 5B 1146 1283 - -
Trre2g05035 1283 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 257 1280 IPR015760 -
Trre2g05035 1283 FunFam eukaryotic translation initiation factor 5B 914 1033 - -
Trre2g05035 1283 FunFam Eukaryotic translation initiation factor 5B 1033 1139 - -
Trre2g05035 1283 MobiDBLite consensus disorder prediction 653 679 - -
Trre2g05035 1283 Gene3D - 686 913 IPR027417 -
Trre2g05035 1283 MobiDBLite consensus disorder prediction 531 546 - -
Trre2g05035 1283 Gene3D Translation factors 1146 1283 - -
Trre2g05035 1283 MobiDBLite consensus disorder prediction 221 241 - -
Trre2g05035 1283 MobiDBLite consensus disorder prediction 584 605 - -
Trre2g05035 1283 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 691 907 IPR000795 GO:0003924|GO:0005525
Trre2g05035 1283 MobiDBLite consensus disorder prediction 305 320 - -
Trre2g05035 1283 MobiDBLite consensus disorder prediction 398 473 - -
Trre2g05035 1283 Coils Coil 357 388 - -
Trre2g05035 1283 Gene3D - 1033 1139 IPR036925 -
Trre2g05035 1283 CDD aeIF5B_II 915 1025 - -
Trre2g05035 1283 SUPERFAMILY Translation proteins 1150 1282 IPR009000 -
Trre2g05035 1283 PRINTS GTP-binding elongation factor signature 759 769 IPR000795 GO:0003924|GO:0005525
Trre2g05035 1283 PRINTS GTP-binding elongation factor signature 775 786 IPR000795 GO:0003924|GO:0005525
Trre2g05035 1283 PRINTS GTP-binding elongation factor signature 695 708 IPR000795 GO:0003924|GO:0005525
Trre2g05035 1283 PRINTS GTP-binding elongation factor signature 811 820 IPR000795 GO:0003924|GO:0005525
Trre2g05035 1283 CDD IF2_aeIF5B_IV 1154 1249 - -
Trre2g05035 1283 Pfam Elongation factor Tu GTP binding domain 695 903 IPR000795 GO:0003924|GO:0005525
Trre2g05035 1283 Coils Coil 417 486 - -
Trre2g05035 1283 Pfam Elongation factor Tu domain 2 930 1008 IPR004161 GO:0005525
Trre2g05035 1283 Pfam Translation-initiation factor 2 1022 1132 IPR023115 -
Trre2g05035 1283 MobiDBLite consensus disorder prediction 275 291 - -
Trre2g05035 1283 MobiDBLite consensus disorder prediction 355 372 - -
Trre2g05035 1283 MobiDBLite consensus disorder prediction 168 190 - -
Trre2g05035 1283 Gene3D Translation factors 914 1032 - -
Trre2g05035 1283 MobiDBLite consensus disorder prediction 1 473 - -
Trre2g05035 1283 MobiDBLite consensus disorder prediction 507 618 - -
Trre2g05035 1283 NCBIfam small GTP-binding protein domain 696 820 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05035 Trre-Chr2 57789725 57797700 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05035 1 1283 Eukaryotic Initiation Factors Gene Family AT1G76810 61.382 0.0 1199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05035 K03243 - gmx:100814640 1524.99