Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05031 ATGGAGAACAATAAACCAACAAGCGACGTCGAGAATCCTCCAACGATGAAGTCTCCGGTCACCGATAAGGATGGAGATGATAATGGTGTGGAAGTAGTTTGTCCAATGCCACAACAAGATGATAAAGTTACTGAATTAGGTTCAAGGGAAAAGGAGGGAGAAGGTGAGACTGTAGAATCAGCTGCGGCAAAAAAGAGGAGAAAGAAGAAGGAAAGGGAAAAGGAGAAGAAGGCAGCGGCTGCAGCGGCCGGAAGTGCAGCTGTTATTGAAACTGTAGAAGAGAAATCTGAGACAAGTGAACCAAAGAGAATTGATTCGAAGACGAACAAGAAAGTGCCGAAGCATGTTAGGGAGATGCAAGAATTATTGGCTAGAAGAAAAGAGGATGAAGAGAGAAAGAAAAGAGAAGAGGAAGAGAGGCTAAGGAAAGAAGAAGAGGAGAGACAAAGGCTAGAGGAACTTGAGAGACTGGAAGAAGAGGCTAAACGTATAAAGAAGGAAAAGGAAAAGCAAAAATTACTGAAAAAGAAGCAAGAAGGTAAATTGTTAACTGATAAGCAGAAACAAGAAGCGCGGCGTTTGGAGGCAATGAGGAGGCAGATTCTCAATAGCATAGGAGGTGTGAGTCTTCCTGTTGTGGAGGACACTGGTGCACCGGCTAAGAAACCCGTTTATCAGACAAGGACGGGGAGATCAACTAATCGAAATCATAATGGTGAAGCTTCTGTCAAGACAGATGAAAGTGGCGATGCAAAGGAAACTATAACTGATTTAGATTTAGAGGAACCGTCAGTGCGTATGGAGGACAATGTCGAATTTCTTGAAGCTGTTGAAGAGGATGTTGAGGATGAATGGGATGAAAGAAGCTGGGATGATGTCAATCTGAAAGATAGGGGTGCATTTGCTGATGAAGAAGTTGTGCATCTGAATGCTGGTGCTACGAATAAAACTGTTTCGAAGCCTGCGGTTGAAGAAACTGAAGATAGAAAACAAGCTAAAGTTGTGGTTGAGGACAAAAAGAAAAATCACGATCCACAACAGTCTTTTGTGCCTTCTAGTCCGAGTGATGGGAACCTCCGGTCACCAATTTGCTGCATCATGGGTCATGTGGACACTGGAAAAACCAAGCTTCTGGATTGTATTCGAGGTACCAATGTTCAAGGAGGCGAGGCTGGCGGTATCACTCAACAGATTGGTGCAACATACTTTCCTGCTAAGAACATACGCGAAAGAACTAAGGAACTGAAAGCTGATGCAACATTGAAAGTTCCCGGTCTACTAGTTATTGATACCCCAGGCCACGAATCGTTCAATAATTTAAGGTCTCGCGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACTATAGAATCACTCAATCTATTAAAAATGAGGAACACAGAATTCATTATTGCATTGAATAAGGTTGACAGGATTTTTGGCTGGAAAACATGCAATGCTCCAATTCGTAAAGCAATGAAGCAGCAGTCTAAGGATGTTAAAAATGAGTTTAATATGAAGGTCACTCAGATCGTTACTCAGTTCAAGGAACAAGGTCTAAATACTGAATTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATCCCCGATATGCTATTATTATTGGTTCAATGGACTCAAAGGACCATGATTGAGAAACTTACGTACAGCGAAGAAGTGCAGTGTACCGTTTTGGAAGTCAAGGTTATCGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAACGGCGTTCTTCATGAAGGGGATCAAATAGTTGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTCAAGGGATCATATATCCATCACAAAGAAATCAAAGCTGCAATGGGCATCAAGATCACTGCTCAGGGACTTGAACATGCTATTGCCGGCGCTAGTTTATATGTGGTGAAGCCTAATGATGATTTGGAAAATGTTAAGAAAACGGCCTTGGAAGACGTGGAATCAGTCTTGAGCAGGATTGACAGGAGCGGTGAGGGCGTTTGTGTCCAGGCATCTACCCTTGGTTCATTGGAAGCATTACTCGAGTTTTTGAAAACTCCAGAAGCCAACATTCCTGTTAATGCTATAAACATAGGTCCTGTACATAAGAAGGATGTGATTAAGGCCAGTGTAATGCTTGAAAAGAAGCGAGAGTATTCTACTATATTGGCGTTCGATGTCAAAGTCATCCCAGAAGCAAGGGAACTTGCAGATAAATTGGGTGTGAAAATATTTAGCGCCGATATCATTTATCATTTATTTAATCAATTTAAGGCTTACATGGACAACATTAAGGAGGAGAAAAAGAAAGAATCTGCTGACGAGGTAGTCTTCCCATGTGTTCTCAAGATCATACCAAATTGTATCTTCAACAAAAAGGATCCGATTATTTTGGGAGTTAATATCGTTGAAGGCACATTAAAGATTGGGACTCCGATTTGTATTCCTTCCCAAGATTTTATTGATATTGGCCGCATTGCCTCCGTTGAAATTAACAATAAGCCGGTTAATCGTGCAATGAAAGGGCAGGAAGTAGCCATTAAGATTGTTGGCTGCAATTCTGAGGAAAAGCAGAAAACGTTTGGGAGACATTTTGATATCGATGATGAACTTGTAAGCCATATTTCGCAGAGATCTATTGATGTTCTCAATACTAATCATCGGGACGATCTGTCTATGGAGGAACGGAAGCTAATAGCGACATTGAAGAGACTTTTCAAGATACAATGA 2838 0.4119 MENNKPTSDVENPPTMKSPVTDKDGDDNGVEVVCPMPQQDDKVTELGSREKEGEGETVESAAAKKRRKKKEREKEKKAAAAAAGSAAVIETVEEKSETSEPKRIDSKTNKKVPKHVREMQELLARRKEDEERKKREEEERLRKEEEERQRLEELERLEEEAKRIKKEKEKQKLLKKKQEGKLLTDKQKQEARRLEAMRRQILNSIGGVSLPVVEDTGAPAKKPVYQTRTGRSTNRNHNGEASVKTDESGDAKETITDLDLEEPSVRMEDNVEFLEAVEEDVEDEWDERSWDDVNLKDRGAFADEEVVHLNAGATNKTVSKPAVEETEDRKQAKVVVEDKKKNHDPQQSFVPSSPSDGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQGGEAGGITQQIGATYFPAKNIRERTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIIALNKVDRIFGWKTCNAPIRKAMKQQSKDVKNEFNMKVTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVQWTQRTMIEKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPNDDLENVKKTALEDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPEANIPVNAINIGPVHKKDVIKASVMLEKKREYSTILAFDVKVIPEARELADKLGVKIFSADIIYHLFNQFKAYMDNIKEEKKKESADEVVFPCVLKIIPNCIFNKKDPIILGVNIVEGTLKIGTPICIPSQDFIDIGRIASVEINNKPVNRAMKGQEVAIKIVGCNSEEKQKTFGRHFDIDDELVSHISQRSIDVLNTNHRDDLSMEERKLIATLKRLFKIQ 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05031 945 MobiDBLite consensus disorder prediction 1 15 - -
Trre2g05031 945 PRINTS GTP-binding elongation factor signature 363 376 IPR000795 GO:0003924|GO:0005525
Trre2g05031 945 PRINTS GTP-binding elongation factor signature 443 454 IPR000795 GO:0003924|GO:0005525
Trre2g05031 945 PRINTS GTP-binding elongation factor signature 427 437 IPR000795 GO:0003924|GO:0005525
Trre2g05031 945 PRINTS GTP-binding elongation factor signature 479 488 IPR000795 GO:0003924|GO:0005525
Trre2g05031 945 Gene3D Translation factors 581 694 - -
Trre2g05031 945 FunFam Eukaryotic translation initiation factor 5B 695 801 - -
Trre2g05031 945 NCBIfam small GTP-binding protein domain 364 507 IPR005225 GO:0005525
Trre2g05031 945 CDD IF2_eIF5B 362 571 - -
Trre2g05031 945 FunFam eukaryotic translation initiation factor 5B 581 695 - -
Trre2g05031 945 Coils Coil 264 284 - -
Trre2g05031 945 MobiDBLite consensus disorder prediction 1 191 - -
Trre2g05031 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 644 IPR027417 -
Trre2g05031 945 Coils Coil 116 181 - -
Trre2g05031 945 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 678 807 IPR036925 -
Trre2g05031 945 MobiDBLite consensus disorder prediction 43 66 - -
Trre2g05031 945 MobiDBLite consensus disorder prediction 313 356 - -
Trre2g05031 945 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 359 574 IPR000795 GO:0003924|GO:0005525
Trre2g05031 945 MobiDBLite consensus disorder prediction 93 191 - -
Trre2g05031 945 FunFam Eukaryotic translation initiation factor 5B 808 945 - -
Trre2g05031 945 Pfam Translation-initiation factor 2 679 794 IPR023115 -
Trre2g05031 945 Pfam Elongation factor Tu GTP binding domain 363 569 IPR000795 GO:0003924|GO:0005525
Trre2g05031 945 Coils Coil 58 78 - -
Trre2g05031 945 SUPERFAMILY Translation proteins 812 944 IPR009000 -
Trre2g05031 945 Gene3D - 695 801 IPR036925 -
Trre2g05031 945 Gene3D Translation factors 808 945 - -
Trre2g05031 945 MobiDBLite consensus disorder prediction 211 253 - -
Trre2g05031 945 FunFam Eukaryotic translation initiation factor 5B 353 580 - -
Trre2g05031 945 MobiDBLite consensus disorder prediction 321 345 - -
Trre2g05031 945 CDD IF2_aeIF5B_IV 816 911 - -
Trre2g05031 945 CDD aeIF5B_II 582 687 - -
Trre2g05031 945 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 61 942 IPR015760 -
Trre2g05031 945 Pfam Elongation factor Tu domain 2 597 670 IPR004161 GO:0005525
Trre2g05031 945 Gene3D - 354 580 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05031 Trre-Chr2 57771403 57775580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05031 112 945 Eukaryotic Initiation Factors Gene Family AT1G76810 66.145 0.0 1042
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05031 K03243 - gmx:100814640 1206.43