Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05026 ATGCTGGGTGACTCAGCTGTTTTGGGTGGCGGTGGAGATGCAGCACCACCCAACATGACGGCAGAAGCGGCAGTTACTGGTGGTGGAGTTGGATCAAATTCAGAGAGTGATGTTGAAAGAAGTAGAATTGATGAAGGTGAACGTAGCTTAGGCGGTAACCGTTGGCCGCGACAAGAAACTATGGCTCTTTTAAGGATACGATCGGATATGGACACAACGTTTCGAGATGCAAGTGTTAAAGGTCCCTTATGGGATGAAGTTTCAAGGAAGCTAGCAGAACTTGGGTACCACAGAAGTGCAAAGAAATGCAAGGAGAAATTTGAAAATGTTTATAAATATCACAAGAGAACAAAAGATGGTCGCGGTGGAAAATCTGATGGTAAAACTTATCGATTTTTTGATCAATTAGAAGCCCTTGATCATTTTCATAACCCCCCTTCCATTCATCCTCAATCTCAAAATCAACCCCAAATTCCATCAAAATCACCACAAATATCTGCACCAACAACGACTCCGCCACAAGTTGTTACAACTGCAACAATTTCAATCCCAAATTCAGAAACAACAACAATTCCAATGTCATTGCGGCCGGTGGTTAACACCACTCTTAGTATCCCCAATGCAAGTGTTCCATCAATTCCCATGCCTCAAAACAATATTGTAACTACCCAATCAATTATGAATATGAACCAAACAATCCCATCCAATCCTTCAATGAGTTTCCAACCATCAACAACAAACACTGCTACCATAAACCCTCTTCCATCTTTCCCTAACATTTCTACCGATCTATTATCAAATTCCATGGCGAGTTCTTACTCGACCTCTTCTGATGATACAATGGAAGAAGGATCGCGAAAGAGGAAGCGGAAATGGACGAACTTTTTTGAGAGGCTGATGAAGGAAGTGATTGAGAAACAAGAGGATTTGCATAAGAGATTCTTGGAAGCTATTGAGAAACGTGAACATGACCGAATGGCTAGAGAAGAAGCTTGGAGAGAACAAGAGATGCAAAGAATCAATAGAGAGAGGGAAATTCTTGCACAAGAAAGATCTATATCTGCAGCAAAAGATGCTGCAATTATGTCTTTCTTGCAAAAAATCGCAGAACAACAAAATCTAGGACAAGCATTGAATAACATCAACATTGCACAACCACCGCCACCACAACAGACACAACAGCAGCAGCAGCAACCACAAAAACAACGAAGTGCAGCACCAACACCACTACCGCCACCAACACCAATATCAATGGTACAAGCCCACCCACCACCATCTTCTCAACTACCACAAGTAACTAAACCGGCCCCACCAATGGTCTCACACCAACAACAATCGGTGACGAATATGGAAATAGTAAAAGTTGATACTAATGGTGAGAATTTGATGGGAGTGAGTCCGTCAAGGTGGCCAAAAGTGGAAGTTCAAGCACTAATAAATCTTCGAACGAGCATGGATAATAAGTACCAAGAGAATGTACCAAAAGGCCCTCTATGGGAGGAGATATCTTCAGCAATGAAAAACCTTGGATACAATAGAAATGCTAAAAGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAAAGTGAAGGAAACTAACAAAAAGAGACCCGAAGATTCAAAGACATGTCCTTATTTTCATCAATTGGATGCTTTGTATAAGGAGAAAGGCAAGGGTGACAATTCTGGTGGAAGTGGTAGTTCGAGCCAGGTAGTGAAGACGGATAACATGACAACGCCGTTAATGGTCAGGCCGGAGCAACAATGGCCACCTCAGCAGGAAGAAGATCGAATAAATCAGAACCATGGAGAGGAAGAAGATGATATGGATGAAGATGATAAGGAAGGAGAGGATGAAAACGGAGAAGATATGGATGAAAGTGGTAGTGGTGGTGGTGGTAGTAACTTTGAGGTAGTGGCAAGCAAGCCTACGGTGGATGCATCAGCTTGA 1959 0.4227 MLGDSAVLGGGGDAAPPNMTAEAAVTGGGVGSNSESDVERSRIDEGERSLGGNRWPRQETMALLRIRSDMDTTFRDASVKGPLWDEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRGGKSDGKTYRFFDQLEALDHFHNPPSIHPQSQNQPQIPSKSPQISAPTTTPPQVVTTATISIPNSETTTIPMSLRPVVNTTLSIPNASVPSIPMPQNNIVTTQSIMNMNQTIPSNPSMSFQPSTTNTATINPLPSFPNISTDLLSNSMASSYSTSSDDTMEEGSRKRKRKWTNFFERLMKEVIEKQEDLHKRFLEAIEKREHDRMAREEAWREQEMQRINREREILAQERSISAAKDAAIMSFLQKIAEQQNLGQALNNINIAQPPPPQQTQQQQQQPQKQRSAAPTPLPPPTPISMVQAHPPPSSQLPQVTKPAPPMVSHQQQSVTNMEIVKVDTNGENLMGVSPSRWPKVEVQALINLRTSMDNKYQENVPKGPLWEEISSAMKNLGYNRNAKRCKEKWENINKYFKKVKETNKKRPEDSKTCPYFHQLDALYKEKGKGDNSGGSGSSSQVVKTDNMTTPLMVRPEQQWPPQQEEDRINQNHGEEEDDMDEDDKEGEDENGEDMDESGSGGGGSNFEVVASKPTVDASA 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05026 652 MobiDBLite consensus disorder prediction 405 420 - -
Trre2g05026 652 PANTHER FI21293P1 29 611 - -
Trre2g05026 652 MobiDBLite consensus disorder prediction 558 652 - -
Trre2g05026 652 MobiDBLite consensus disorder prediction 141 174 - -
Trre2g05026 652 MobiDBLite consensus disorder prediction 380 404 - -
Trre2g05026 652 CDD GT1 53 118 - -
Trre2g05026 652 MobiDBLite consensus disorder prediction 421 445 - -
Trre2g05026 652 ProSiteProfiles Myb-like domain profile. 47 111 IPR001005 -
Trre2g05026 652 Gene3D - 470 531 - -
Trre2g05026 652 Gene3D - 55 116 - -
Trre2g05026 652 SMART sant 51 113 IPR001005 -
Trre2g05026 652 SMART sant 466 528 IPR001005 -
Trre2g05026 652 MobiDBLite consensus disorder prediction 1 56 - -
Trre2g05026 652 MobiDBLite consensus disorder prediction 37 52 - -
Trre2g05026 652 FunFam Trihelix transcription factor GT-2 470 531 - -
Trre2g05026 652 Pfam Myb/SANT-like DNA-binding domain 53 139 IPR044822 -
Trre2g05026 652 Pfam Myb/SANT-like DNA-binding domain 468 555 IPR044822 -
Trre2g05026 652 MobiDBLite consensus disorder prediction 380 445 - -
Trre2g05026 652 MobiDBLite consensus disorder prediction 564 599 - -
Trre2g05026 652 CDD GT1 468 533 - -
Trre2g05026 652 MobiDBLite consensus disorder prediction 608 628 - -
Trre2g05026 652 ProSiteProfiles Myb-like domain profile. 468 526 IPR001005 -
Trre2g05026 652 MobiDBLite consensus disorder prediction 146 174 - -
Trre2g05026 652 FunFam Trihelix transcription factor GT-2 55 116 - -
Trre2g05026 652 MobiDBLite consensus disorder prediction 269 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05026 Trre-Chr2 57719881 57722772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05026 51 597 Trihelix Transcription Factor Family AT1G76890 44.561 3.64e-136 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre2g05026 Myb_DNA-bind_4 3.9e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05026 - - psat:127090944 842.802