Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05025 ATGGATAATTCTACCGGTGAGAATATTGTTCCGTCCATGGTTGCGCAAAACGGCGCCAAGGGTGGTCATGAAGAGAAAGAAAGAGAGATTATTGATGAAGATGATAAGATGAATATGAATGGTGGTGGTGGAAATAGGTGGCCCCGCCAAGAAACATTGGCACTCTTGAAGATAAGATCGGATATGGATGGTGTTTTTCGTGATTCAAGTCTTAAGGGTCCCTTATGGGATGAAGTTTCAAGAAAACTAGGTGAACTTGGTTATCACCGAAGCTCAAAAAAATGCAAAGAGAAATTTGAGAATGTATACAAATATCACAAAAGAACCAAAGAAGGTAGAAGTGGAAAATCAGAAGGAAAAACTTATAGATTTTTTGATCAATTACAAGCACTTGAAAAACAATTCACACTCTCTTCTTATTCTCCAAAACCACAACCAAATAATCACACACCCTCATTACCAACAATAAAGCCTAATGAAACCACAAATCCAATATCACATGTAACCTATACTACTATTCCATCCACAAACCCTACTGCACTCATTTTCCCTTCACCACCGTCAACCAATGTTGCAACCAACCCTAACAACAACAACCATGTTCCATATTCTTTGCCAAACATGAACAACCTATTCTCAAACACAACTACCTCAACTTCGTCTTCCACGGCTTCAGACGAAGACTTGGAAGAGAAGTATAGGAAGAAAAGAAAATGGAAGGACTATTTCAGGAGATTGACAAGACAAGTGTTGGCAAAACAAGAGGAAATGCAAAAGAAATTTCTAGAAGCCATAGATAAACGCGAAAAAGAACACATGGCTCAACAAGACGCTTTGAGAATTCAAGAAATAAATCGAATCAATAAAAAACACGAACTTCTTGTTCAAGAAAGATCATCAGCAGCTCAAAAAAATGCCGCCGTTATTGCCTTTCTCCAAAAATTGTCTGGACAACCACCACTACAACCACCGCCACCACCACCACCAACAGTGCCAGAGATGTCTCCGGTTCCGGTATCACAAGTACAAACACACCAACTAGTGATACCAAACAATGTTAACATTGTTGAAATTAAGAATATGAATAATGGTCACAAAAGTGATTGTGGTGTTGCTTCTCCATCAAGGTGGCCAAAAAGTGAAGTTCATGCACTTATTAGGATAAGAACAAGTCTTGAACCAAAATATCAAGAAAATGGACCAAAAGCACCATTGTGGGAAGATATATCAGCTGGAATGAAGAAACTTGGTTACAATAGGAATGCAAAAAGGTGCAAAGAGAAATGGGAGAATATCAACAAGTACTACAAGAAGATGAAGGAAAGTAACAAACAAAGGCGTGATGATAGTAAGACATGTCCTTATTTTAATGAACTTGAAGCTCTTTACAAAGAAAAGAACAAATTACAGAACCCTTTTGGTTCTAATTCGTTTCATAGTATAAAGTCAAGTGAGATGATGGAGCCGTTAATGGTGCAACCAGAACAACAATGGAGACCTCCAACTCAAGATGAAGAAGCTAATGTGGTGAAGAAGAATATTAGTGAAGCAAAAGAAGATGAAGATGATGGTGATGTTGATGATGAGGATGAAAACATGGATGACTATGAAGATGGAGATAGCATGGAAGAAGATGAAGGAGGTGTTAGTAGCCGTTATGAAGTTGTCACAACAAATAAACTTTCTTCAATGGATACAGTTGAATGA 1707 0.3796 MDNSTGENIVPSMVAQNGAKGGHEEKEREIIDEDDKMNMNGGGGNRWPRQETLALLKIRSDMDGVFRDSSLKGPLWDEVSRKLGELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALEKQFTLSSYSPKPQPNNHTPSLPTIKPNETTNPISHVTYTTIPSTNPTALIFPSPPSTNVATNPNNNNHVPYSLPNMNNLFSNTTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKKFLEAIDKREKEHMAQQDALRIQEINRINKKHELLVQERSSAAQKNAAVIAFLQKLSGQPPLQPPPPPPPTVPEMSPVPVSQVQTHQLVIPNNVNIVEIKNMNNGHKSDCGVASPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAGMKKLGYNRNAKRCKEKWENINKYYKKMKESNKQRRDDSKTCPYFNELEALYKEKNKLQNPFGSNSFHSIKSSEMMEPLMVQPEQQWRPPTQDEEANVVKKNISEAKEDEDDGDVDDEDENMDDYEDGDSMEEDEGGVSSRYEVVTTNKLSSMDTVE 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05025 568 PANTHER FI21293P1 17 511 - -
Trre2g05025 568 ProSiteProfiles Myb-like domain profile. 375 433 IPR001005 -
Trre2g05025 568 MobiDBLite consensus disorder prediction 552 568 - -
Trre2g05025 568 Pfam Myb/SANT-like DNA-binding domain 375 462 IPR044822 -
Trre2g05025 568 Pfam Myb/SANT-like DNA-binding domain 45 131 IPR044822 -
Trre2g05025 568 MobiDBLite consensus disorder prediction 138 159 - -
Trre2g05025 568 FunFam Trihelix transcription factor GT-2 377 438 - -
Trre2g05025 568 CDD GT1 375 440 - -
Trre2g05025 568 CDD GT1 45 110 - -
Trre2g05025 568 MobiDBLite consensus disorder prediction 495 568 - -
Trre2g05025 568 FunFam Trihelix transcription factor GT-2 47 108 - -
Trre2g05025 568 MobiDBLite consensus disorder prediction 520 544 - -
Trre2g05025 568 SMART sant 373 435 IPR001005 -
Trre2g05025 568 SMART sant 43 105 IPR001005 -
Trre2g05025 568 MobiDBLite consensus disorder prediction 1 48 - -
Trre2g05025 568 ProSiteProfiles Myb-like domain profile. 45 103 IPR001005 -
Trre2g05025 568 MobiDBLite consensus disorder prediction 505 519 - -
Trre2g05025 568 MobiDBLite consensus disorder prediction 20 36 - -
Trre2g05025 568 Gene3D - 47 108 - -
Trre2g05025 568 Gene3D - 377 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05025 Trre-Chr2 57691371 57693911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05025 41 497 Trihelix Transcription Factor Family AT1G76890 50.304 1.17e-139 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre2g05025 Myb_DNA-bind_4 8.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05025 - - gsj:114370603 634.409