Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05024 ATGCAGCTTGGTGATGCAACAATAGTGATGGATAATTCTACCGGTGAGAATATTGTTCCGTCCATGGTTGCGCAAAACGGCGCCAAGGGTGGTCATGAAGAGAAAGAAAGAGAGATTATTGATGAAGATGATAAGATGAATATGAATGGTGGTGGTGGAAATAGGTGGCCCCGCCAAGAAACATTGGCACTCTTGAAGATAAGATCGGATATGGATGGTGTTTTTCGTGATTCAAGTCTTAAGGGTCCCTTATGGGATGAAGTTTCAAGAAAACTAGGTGAACTTGGTTATCACCGAAGCTCAAAAAAATGCAAAGAGAAATTTGAGAATGTATACAAATATCACAAAAGAACCAAAGAAGGTAGAAGTGGAAAATCAGAAGGAAAAACTTATAGATTTTTTGATCAATTACAAGCACTTGAAAAACAATTCACACTCTCTTCTTATTCTCCAAAACCACAACCAAATAATCACACACCCTCATTACCAACAATAAAGCCTAATGAAACCACAAATCCAATATCACATGTAACCTATACTACTATTCCATCCACAAACCCTACTGCACTCATTTTCCCTTCACCACCGTCAACCAATGTTGCAACCAACCCTAACAACAACAACCATGTTCCATATTCTTTGCCAAACATGAACAACCTATTCTCAAACACAACTACCTCAACTTCGTCTTCCACGGCTTCAGACGAAGACTTGGAAGAGAAGTATAGGAAGAAAAGAAAATGGAAGGACTATTTCAGGAGATTGACAAGACAAGTGTTGGCAAAACAAGAGGAAATGCAAAAGAAATTTCTAGAAGCCATAGATAAACGCGAAAAAGAACACATGGCTCAACAAGACGCTTTGAGAATTCAAGAAATAAATCGAATCAATAAAAAACACGAACTTCTTGTTCAAGAAAGATCATCAGCAGCTCAAAAAAATGCCGCCGTTATTGCCTTTCTCCAAAAATTGTCTGGACAACCACCACTACAACCACCGCCACCACCACCACCAACAGTGCCAGAGATGTCTCCGGTTCCGGTATCACAAGTACAAACACACCAACTAGTGATACCAAACAATGTTAACATTGTTGAAATTAAGAATATGAATAATGGTCACAAAAGTGATTGTGGTGTTGCTTCTCCATCAAGGTGGCCAAAAAGTGAAGTTCATGCACTTATTAGGATAAGAACAAGTCTTGAACCAAAATATCAAGAAAATGGACCAAAAGCACCATTGTGGGAAGATATATCAGCTGGAATGAAGAAACTTGGTTACAATAGGAATGCAAAAAGGTGCAAAGAGAAATGGGAGAATATCAACAAGTACTACAAGAAGATGAAGGAAAGTAACAAACAAAGGCGTGATGATAGTAAGACATGTCCTTATTTTAATGAACTTGAAGCTCTTTACAAAGAAAAGAACAAATTACAGAACCCTTTTGGTTCTAATTCGTTTCATAGTATAAAGTCAAGTGAGATGATGGAGCCGTTAATGGTGCAACCAGAACAACAATGGAGACCTCCAACTCAAGATGAAGAAGCTAATGTGGTGAAGAAGAATATTAGTGAAGCAAAAGAAGATGAAGATGATGGTGATGTTGATGATGAGGATGAAAACATGGATGACTATGAAGATGGAGATAGCATGGAAGAAGATGAAGGAGGTGTTAGTAGCCGTTATGAAGTTGTCACAACAAATAAACTTTCTTCAATGGATACAGTTGAATGA 1734 0.3806 MQLGDATIVMDNSTGENIVPSMVAQNGAKGGHEEKEREIIDEDDKMNMNGGGGNRWPRQETLALLKIRSDMDGVFRDSSLKGPLWDEVSRKLGELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALEKQFTLSSYSPKPQPNNHTPSLPTIKPNETTNPISHVTYTTIPSTNPTALIFPSPPSTNVATNPNNNNHVPYSLPNMNNLFSNTTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKKFLEAIDKREKEHMAQQDALRIQEINRINKKHELLVQERSSAAQKNAAVIAFLQKLSGQPPLQPPPPPPPTVPEMSPVPVSQVQTHQLVIPNNVNIVEIKNMNNGHKSDCGVASPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAGMKKLGYNRNAKRCKEKWENINKYYKKMKESNKQRRDDSKTCPYFNELEALYKEKNKLQNPFGSNSFHSIKSSEMMEPLMVQPEQQWRPPTQDEEANVVKKNISEAKEDEDDGDVDDEDENMDDYEDGDSMEEDEGGVSSRYEVVTTNKLSSMDTVE 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05024 577 MobiDBLite consensus disorder prediction 504 577 - -
Trre2g05024 577 MobiDBLite consensus disorder prediction 29 45 - -
Trre2g05024 577 SMART sant 52 114 IPR001005 -
Trre2g05024 577 SMART sant 382 444 IPR001005 -
Trre2g05024 577 MobiDBLite consensus disorder prediction 529 553 - -
Trre2g05024 577 MobiDBLite consensus disorder prediction 21 57 - -
Trre2g05024 577 ProSiteProfiles Myb-like domain profile. 384 442 IPR001005 -
Trre2g05024 577 FunFam Trihelix transcription factor GT-2 386 447 - -
Trre2g05024 577 MobiDBLite consensus disorder prediction 514 528 - -
Trre2g05024 577 CDD GT1 54 119 - -
Trre2g05024 577 CDD GT1 384 449 - -
Trre2g05024 577 ProSiteProfiles Myb-like domain profile. 54 112 IPR001005 -
Trre2g05024 577 FunFam Trihelix transcription factor GT-2 56 117 - -
Trre2g05024 577 Pfam Myb/SANT-like DNA-binding domain 384 471 IPR044822 -
Trre2g05024 577 Pfam Myb/SANT-like DNA-binding domain 54 140 IPR044822 -
Trre2g05024 577 Gene3D - 386 447 - -
Trre2g05024 577 Gene3D - 56 117 - -
Trre2g05024 577 MobiDBLite consensus disorder prediction 561 577 - -
Trre2g05024 577 PANTHER FI21293P1 26 520 - -
Trre2g05024 577 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05024 Trre-Chr2 57691344 57693911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05024 50 506 Trihelix Transcription Factor Family AT1G76890 49.899 1.08e-139 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre2g05024 Myb_DNA-bind_4 8.5e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05024 - - gsj:114370603 644.425