Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05023 ATGTCCTTCCGTAGTATTATGCGTGATGTGAGGGATGGATTTGGAAGTTTATCAAGGCGGAGTTTTGAGGTGAGACTTCCTGGCCATGAAAGGGGTAAGTCGCGTAGTTCGGTCCATGAATTGCATGATCAGCCTCCAGTTATTCAGAACAGCCGGTGGGCTAGTCTTCCACCCGAGCTTCTACGCGATGTGATTAATAGATTGGAAACTAATGAGAGTACTTGGCCTAGTCGTAAGCATGTGGTTGCTTGTGCTGCTGTGTGCAAGTCATGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCTTGAATTCTGTGGGAAGATTACTTTCCCCATTTCATTGAAGCAGCCAGGGTATAGGGATGGACCTATCCAATGTTTCATCAAGAGAGACAAATCTAAGCTGACGTATCACCTCTTCCTTTGCCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTTTGTCTGCAAAACGTACCAGAAGAACGACTTGCACGGAGTATGTTATATCAATGGATGCAGATAACATATCAAGATCTAGTAGCACTTACATTGGAAAGCTTAGGTCTAACTTTCTCGGGACCAAGTTCATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGGCTCCACCTGGACGCAGCCGTAGATTCTACTCGAAAAAAGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATCGCCCAGGTCACCTATGAGTTGAATGTTCTCGGTACTAGAGGCCCGCGAAGGATGAATTGCACCATGTACTCGGTCCCTGCATCTTCCCTTGAGCCAGGTGGCATTGTCCCAGGCCAGCCGGAGCTCATTCAGCGCTCACTTGAGGATTCTTTCCGTAGTTTATCTTTTGCAAGATCAATCGATAATTCAACCGAGTTTAGCAGCTGTAGATTCTCGGACATAATGGGAGCCAGCAATGAAGACGAGGAGGGGAAAGAGAGACCTCTAGTTCTTAAGAACAAGTCTCCGAGATGGCACGAACAGCTGCAATGTTGGTGCCTTAACTTTAGAGGAAGAGTGACTGTCGCATCCGTCAAGAATTTCCAGCTGATTGCTGCAACACAGCCTGCAGCTGTTGCTCCTCATGCAACAGCAGGACCTGCTCCGTCACAGCCGGGACAGTCCGACCATGACAAGATTATTCTTCAGTTTGGCAAGGTCGGTAAGGATATGTTTACGATGGACTATCGGTACCCTCTATCGGCATTTCAGGCTTTTGCGATATGTTTGACTAGCTTTGACACAAAACTGGCATGTGAATAG 1293 0.464 MSFRSIMRDVRDGFGSLSRRSFEVRLPGHERGKSRSSVHELHDQPPVIQNSRWASLPPELLRDVINRLETNESTWPSRKHVVACAAVCKSWREMCKEIVSSLEFCGKITFPISLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLAPPGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSVPASSLEPGGIVPGQPELIQRSLEDSFRSLSFARSIDNSTEFSSCRFSDIMGASNEDEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAVAPHATAGPAPSQPGQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05023 430 Pfam Tub family 114 425 IPR000007 -
Trre2g05023 430 FunFam Tubby-like F-box protein 110 430 - -
Trre2g05023 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Trre2g05023 430 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Trre2g05023 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Trre2g05023 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Trre2g05023 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Trre2g05023 430 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Trre2g05023 430 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Trre2g05023 430 Pfam F-box domain 53 99 IPR001810 GO:0005515
Trre2g05023 430 Gene3D Tubby Protein; Chain A 113 424 IPR025659 -
Trre2g05023 430 Gene3D - 48 102 - -
Trre2g05023 430 PANTHER TUBBY-RELATED 44 428 - -
Trre2g05023 430 SUPERFAMILY Tubby C-terminal domain-like 103 430 IPR025659 -
Trre2g05023 430 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Trre2g05023 430 CDD F-box_AtTLP-like 53 97 - -
Trre2g05023 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Trre2g05023 430 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Trre2g05023 430 FunFam Tubby-like F-box protein 48 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05023 Trre-Chr2 57657676 57659788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05023 1 430 TUB Transcription Factor Family AT1G76900 69.890 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre2g05023 Tub 1.3e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05023 K19600 - gmx:100817532 772.311