Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05018 ATGAACACAAGAACTGGTGAGCTAAGTGCTGCTGAGTTGGAGAATCTGATGGATGTGGTTGCCAATCCTAGACAATTTAAGATACCTGATTGGTTTTTGAACAGGAAGAAAGACTACAAGAATGTAAAGTACTCTCATGTGGTTTCAAATGCATTGGATATGAAGTTAAGGGATGACTTGGAGAGACTAAAAAATTCAGGTTATTAG 207 0.3768 MNTRTGELSAAELENLMDVVANPRQFKIPDWFLNRKKDYKNVKYSHVVSNALDMKLRDDLERLKNSGY 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05018 68 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 1 68 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre2g05018 68 Pfam Ribosomal protein S13/S18 2 66 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre2g05018 68 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 65 - -
Trre2g05018 68 Gene3D 30s ribosomal protein s13, domain 2 42 68 IPR027437 -
Trre2g05018 68 Gene3D - 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05018 Trre-Chr2 57569563 57569890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05018 1 64 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 84.375 5.95e-36 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05018 K02964 - zof:121967244 116.316