Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05008 ATGATGATGTCAGGTTTTGTTCCTGTCTCTTCTAGTTCTAATTCTCCTCGTATGTATTCTTCTGGTTCATCATCATCATCATCATGGGTTGGACACAAAAGAGGGCGTGAAGATGATGATGATGCAGTTGGTGTTGGTGTTTCTTCTTCTCATCAAGATATGACTACAATTCATAGAAATATTGCTGATTTTAGATTACCTACTTCACAGGGAAACTCATTATCATCAGCAACAGAAGCAACTACACCTACAAGTACAAGCAATGCAATGCAATCGAATGAAGCCGCCGCAGCAACAAACGAAGAAGAAACCGGAGAGAAAAGAAGAAGATACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCAGCAGAAATTCGCGATCCACACAAAGCAGCAAGAGTATGGCTTGGAACATTCGACACAGCAGAAGCCGCGGCAAGAGCTTACGATGAAGCTGCATTAAGATTCAGAGGAAATAGAGCAAAACTCAACTTTCCTGAAAATGTTACATCAACAAGACCAATTTTTCCGGCAAATACTTCAACCGTATCTAATTCTCCGGCAACCCATTATTCTCCGGCACCACCACAACCACAACAAATGCAGACACAGACACAGACACAGACACATCCACCGTTTGTTCAATTTCAAGGAACTTCTGATTTGTTAAGAGACTATTATCAATATTCACAGATTCTAAAAGGTTCAGGTGATTTTCAAGGACTTGAGCAATGGTTCTATGAATCACAAATGGCAGCGATACATTCATCGTCTTCTTCGTTGTTAACGCCTTCGCCATCGCTTTCTTTGTCAACTTCTTCATCTCCAACTACATTTTCACCTTCTAGTCAATTATCCTCTGTTTCACTTCCCCTGTTTCCTGGTCAGCAAATGGAGTTTTTCCGGTCACCGGAAGATCAATCTCGTAGCGGAGGATATGGTGGTGGCCCTGGTGGGTCCCATTTTCAACCCTCATGGTCAGATACCGGTGGCTATCATCATCATCATCATCCTCCTCCTCCACCACCTTCTTCTAGTTGA 1044 0.4282 MMMSGFVPVSSSSNSPRMYSSGSSSSSSWVGHKRGREDDDDAVGVGVSSSHQDMTTIHRNIADFRLPTSQGNSLSSATEATTPTSTSNAMQSNEAAAATNEEETGEKRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVTSTRPIFPANTSTVSNSPATHYSPAPPQPQQMQTQTQTQTHPPFVQFQGTSDLLRDYYQYSQILKGSGDFQGLEQWFYESQMAAIHSSSSSLLTPSPSLSLSTSSSPTTFSPSSQLSSVSLPLFPGQQMEFFRSPEDQSRSGGYGGGPGGSHFQPSWSDTGGYHHHHHPPPPPPSSS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05008 347 MobiDBLite consensus disorder prediction 1 113 - -
Trre2g05008 347 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Trre2g05008 347 MobiDBLite consensus disorder prediction 260 347 - -
Trre2g05008 347 CDD AP2 118 169 IPR001471 GO:0003700|GO:0006355
Trre2g05008 347 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Trre2g05008 347 PANTHER DNA-BINDING DOMAIN 76 227 IPR044808 GO:0003700|GO:0009873
Trre2g05008 347 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Trre2g05008 347 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Trre2g05008 347 FunFam Ethylene-responsive transcription factor 2 109 168 - -
Trre2g05008 347 MobiDBLite consensus disorder prediction 175 203 - -
Trre2g05008 347 Gene3D AP2/ERF domain 109 169 IPR036955 GO:0003700|GO:0006355
Trre2g05008 347 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Trre2g05008 347 MobiDBLite consensus disorder prediction 260 294 - -
Trre2g05008 347 MobiDBLite consensus disorder prediction 48 99 - -
Trre2g05008 347 MobiDBLite consensus disorder prediction 1 30 - -
Trre2g05008 347 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05008 Trre-Chr2 57490854 57492789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05008 85 170 AP2-EREBP Transcription Factor Family AT5G61890 67.442 2.01e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g05008 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05008 - - tpra:123903609 437.187