Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05002 ATGGATCCTCATGATGAAGACTTGCCTCATTACATTCATATCAATCAGAATGAATTTTATATGCGAAGGCATAAGAAACAGAAGGAGGAGGATATTGCTATTTGTGAATGTAGGTATGATGAAGATGAACCTGACAGTGCCTGTGGAGATGGGTGTTTAAATGTATTAACCAGCACTGAATGCACCCCTGGTCATTGCCCTTGTGGTATTCTTTGTAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTATTTAAAACTGAAGGCCGGGGGTGGGGTCTTTTGGCTGATGAGGAAATTAAGGAAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGCAAAGAAGCCAAACGTAGATCCCATGCTTATGAAATTGCAGGTCTCAAGGATGCATTTATCATTAGTCTTAATGCGTCTGAATCCATTGATGCAAGTAGAAAAGGAAGCATTGCCAGATTTATCAATCATTCATGTCAGCCAAATTGTGAGACAAGAAAATGGAATGTCTTAGGGGAAATAAGGGTTGGAATATTTGCAAAGCATGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTCTGTGGTGCGCTCAAATGTTCTGGATTCCTTGGAGCAAAGTCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATTGAGAAAATTCCTTTATATGACTCTGCCGAGGATGAACTGACGTCAAATATTGATGGACAAAGTGATCAATCCATGGCTATTATACTTAAAGCTGAAGAATTATCAGACTCCACTGTTTTAGATATTCAACCACTCAATTCTTCAATTGAGGTCAAGGATTTAGGTATTGGAAAGATGAAAACTGAAATAGTAAGCGAGGACATGAAGTTGTACTCCCAAGATACCGAACAGGACCTTTCACAAAAGAATGCAATGATATCGCGCATTCGAAGTAATGCTGCAGGAAGAAACTATCGCATTGGACCTAGGTCCATCTCTACCAAAAGATCAAAGGCAGGGAGAAAGTTTAAAAATCGCATACAGAAGAAAATTGATGCAAAGTATGCAGCTAGCCTTTTAACATCAAAGGTAGCACAAGAGGAGATCTTAGATTATGAGAAAAGAAAAGATGACGCCACAGATGCCCTTGATTCTTTATACAATGAAATACGGCCTGCCATCGAAGAACACGAGAGGGACACCCAAGACAGTGTATCTACAACAGTAGCAGAGAAGTGGATACAGGCTTGCTGCCTTAAACTGAAAGCCGAGTTTGATCTTTACTCGTCAATTATTATAAATGTTGGCTGTAATGCTCAAAGAGCACCTGGCCAAGCAAAATCTACGGAAGCAGACAATGAAAACAAAATTAAGCTGTTGACAGCAGATTGA 1446 0.3907 MDPHDEDLPHYIHINQNEFYMRRHKKQKEEDIAICECRYDEDEPDSACGDGCLNVLTSTECTPGHCPCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEEIKEGQFVIEYCGEVISCKEAKRRSHAYEIAGLKDAFIISLNASESIDASRKGSIARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDELTSNIDGQSDQSMAIILKAEELSDSTVLDIQPLNSSIEVKDLGIGKMKTEIVSEDMKLYSQDTEQDLSQKNAMISRIRSNAAGRNYRIGPRSISTKRSKAGRKFKNRIQKKIDAKYAASLLTSKVAQEEILDYEKRKDDATDALDSLYNEIRPAIEEHERDTQDSVSTTVAEKWIQACCLKLKAEFDLYSSIIINVGCNAQRAPGQAKSTEADNENKIKLLTAD 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05002 481 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0042054
Trre2g05002 481 Gene3D SET domain 1 235 IPR046341 -
Trre2g05002 481 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
Trre2g05002 481 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Trre2g05002 481 Pfam SET domain 94 200 IPR001214 GO:0005515
Trre2g05002 481 Coils Coil 380 407 - -
Trre2g05002 481 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
Trre2g05002 481 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Trre2g05002 481 SMART set_7 83 206 IPR001214 GO:0005515
Trre2g05002 481 SUPERFAMILY SET domain 8 220 IPR046341 -
Trre2g05002 481 FunFam Histone-lysine N-methyltransferase 1 235 - -
Trre2g05002 481 PANTHER SET DOMAIN PROTEINS 5 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05002 Trre-Chr2 57435794 57439988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05002 66 222 C2H2 Transcription Factor Family AT2G23740 35.000 2.00e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre2g05002 SET 3.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05002 - - gmx:100804657 791.186