Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05001 ATGGAACACGGCTTGCAAGCCATCTTGGCTGCATTCGCTAGCTTCATCGTCGTAACAGTAATATTCGCCGTCATCATTCTCATCTGTCAGTACCGGAAAGCCGTTCAAATCCGCCGTAACAACCAGATCCGAACCCGACCACTTCGAAACTCAAACCATTACCCAACCAGCTCCAATTCCTTCCCGGGTGTGGACGCTGGCTGGTCATGGGATCCCAATCTCAAAATCTCCATGGAAGAACTCTCCCGTGCCACCAATAACTTCTCACCATACCGAGTCGTCGGTGACGGCAGCTTCGGCCTAGTCTACAAAGCTCGTCTCTCCACCGGCGACGTCGTCGCCGTCAAAAAACTCTCCCCCGACGCTTTTCAAGGATTCCGCGAATTCGCGGCGGAGATGGAAACCCTAAGCAAGCTTAGCCACGACAATATCGTTAAAATCCTCGGTTATTGGGCTTCTGGACCTGAACGGTTACTCGTTTACGAGTACATCGAAAAAGGAAATCTCGATCAATGGCTTCACGAACCTTCTTCTCCAACGCACCCAAACGACGACGTTTTCTCCACTGATATTATTCGTTCTCCTTTGTCTTGGGAAACAAGGGTCAACATAATTCGTGGTGTTGCTCATGGGCTTTGTTATTTACATGGGCTTCAGAAGCCCATTATTCATCGAGATATCAAAGCTAGCAATGTCTTATTGGACTCTGATTTTCAGGCCCATATTGCTGATTTTGGGCTCGCACGTAGGATGGATAAATCGCATTCGCACGTGTCAACGCAGGTTGCGGGTACTATTGGTTACATGCCGCCAGAGTATAGAGATGGGTCTAATGTAGCAAACCCGAAAGTTGATGTTTATAGTTTTGGGGTGTTGATGATTGAAACTGTGTCGGGGCATAGGCCGAATTTGGCTGTGAAATTGGAAGGAAATGATACTGGGCTTGTTAATTGGGCCAGGAAGATGAAGGAAAGGAACACTGAGATAGAAATGCTGGATGTAAATATTCCTAGAGAAGAAGGGTTGAAGGAAGAGAGTGTTAGGAAGTATGTACATATTGCTTGTATGTGCACTGGTGAGTTACAGAAAGATAGGCCTGAAATGCCAGAGGTTGTCAAATTATTGGACTCAATGCTCCTATAA 1143 0.4681 MEHGLQAILAAFASFIVVTVIFAVIILICQYRKAVQIRRNNQIRTRPLRNSNHYPTSSNSFPGVDAGWSWDPNLKISMEELSRATNNFSPYRVVGDGSFGLVYKARLSTGDVVAVKKLSPDAFQGFREFAAEMETLSKLSHDNIVKILGYWASGPERLLVYEYIEKGNLDQWLHEPSSPTHPNDDVFSTDIIRSPLSWETRVNIIRGVAHGLCYLHGLQKPIIHRDIKASNVLLDSDFQAHIADFGLARRMDKSHSHVSTQVAGTIGYMPPEYRDGSNVANPKVDVYSFGVLMIETVSGHRPNLAVKLEGNDTGLVNWARKMKERNTEIEMLDVNIPREEGLKEESVRKYVHIACMCTGELQKDRPEMPEVVKLLDSMLL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05001 380 CDD STKc_IRAK 94 378 - -
Trre2g05001 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Trre2g05001 380 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Trre2g05001 380 SUPERFAMILY Protein kinase-like (PK-like) 66 375 IPR011009 -
Trre2g05001 380 FunFam Phytosulfokine receptor 2 164 379 - -
Trre2g05001 380 Gene3D Transferase(Phosphotransferase) domain 1 164 380 - -
Trre2g05001 380 Gene3D Phosphorylase Kinase; domain 1 58 163 - -
Trre2g05001 380 FunFam Phytosulfokine receptor 2 49 163 - -
Trre2g05001 380 SMART serkin_6 88 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05001 380 ProSiteProfiles Protein kinase domain profile. 88 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05001 380 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 377 - -
Trre2g05001 380 Pfam Protein kinase domain 91 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05001 Trre-Chr2 57432491 57435259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05001 72 375 Receptor kinase-like Gene Family AT5G07280 43.607 6.53e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre2g05001 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05001 - - mtr:11410577 643.269