LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g04998	ATGGGCTGTGTTCAAGCCAAACCATTAGAATCTGAAGGTTCTTCAGACAACAACAACAACAGAGGACTCAACAGGTTCAAAATGGAAAATGGGTATATTCCAAGTTCTGATTTTGTTCCTCATAGAAGATCCACTGGTGCTCAAACTAAAACTCATCTTGACAAGAACAAGACTATTGATCACAAACAACCCAGAAAGCATAGAGTTGTTGTTGATGGTAAAGGTGGAAAGGGAAAGAGAGATGGTGATTTGAAAGATAGTAAGAAACATTTGAATAAATGTTTTGAAGATGAGATGGTTGATGGTTGGCCTAAATGGTTAGTTGATAATGTTCCTATTCAAAGCTTGGCTGGTTTGGTTCCTAAGAGTGCTGAATCTTACAAAATGATTGATAAGGTAGGACAAGGAACCTACAGCAATGTTTATAAAGCATTAGATCGAGACACGGGCGATATCGTGGCACTCAAAAAGGTCCGCTTCAACACATCAGAGCCCGAAAGCATTAAATTTATGGCAAGAGAAATCACGATATTACAGAAATTGGATCATCCCAATGTAGTAAAACTTAAAGGGCTAGCCACTTCAAGAATGCAGTATAGTATATATCTAGTTTTTGATTTCATGCCAACAGATTTGTCGAGAATTATTACTCGACCTGACGAAAGACTAACCGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTTCAGCATTGCCATGATAGGGGAATTTTGCATCGAGATATAAAGGGATCAAATCTTTTGATCAATAAAAATGGAATGCTTCAGATTGCCGATTTTGGACTTGCCAATTATTATAGTATAAATCAACAACAGCCTCTCACAAACCGGGTTGTGACGTTATGGTACAGAGCTCCTGAGTTGTTGTTAGGTTCCACTGATTATGGAATCGGTATTGATCTATGGAGTGCTGGATGTCTCCTTGCAGAAATGTTTAGAGGAGTTCCGATTATGCCTGGAAGAACAGAGGTTGAGCAACTTCATAGAATTTTCAGGCTATGTGGCACACCGTCGCAAGAGTATTGGAAAAAGTTAAAACTTTCTACAACTTTTATACCTCCAAAGTCTTATAGACCAAGTCTGGTAGAAACTTTCAAGGATCTGCCTCCATCTTCTTTAGGTCTTTTATGTACTCTTCTTGCTTTGGATCCTTCATTCCGCGGCAGTGCATCTAAAGCTCTTAAAAATCAGTTTTTCTTTACAAGTCCATTGGCTTGTGATCTGTCTGGTCTGCCAACAATCTACAAAGAAGATGATGAGAACATTCAAGCCAAAGAACAGATCAAGTATATCAACTCCAAAATCAGGCGTTCTCGTACATTTATGGAGCGTCGCAAGAATTTATCATCTAATAAGCCAATAGAACCTACTATATCCTCTAAAGAGGTCTTAAGAAGTACTAATGCTGAGGCTGAAACTTATGTTCCAAGTCAAGAACCAGGTAGTGCAACAAGTAGTACTTCATCTAGTGTAAACCAAGCTGGAATTGGGGACCACTCACCTCTCTTTATCTCTCCATTTCTTGGTTCTGATCAAAAGTTGCCCCACAAAATCCATAGTAGACATGCTAATATTGGTGAAAAAAACATCAAGAACCTTCCTCCATTATCCAAGTCAAAACCAAATGTAAGCAAGAAAGATGATAGCAGATACAGAACAGACCAAATTTTCAGGTCCACTTCTACCAGAGAATTTAGAAAGTTAAAAACAGAAGAAAATTTAGTCTTTGATTAG	1764	0.3838	MGCVQAKPLESEGSSDNNNNRGLNRFKMENGYIPSSDFVPHRRSTGAQTKTHLDKNKTIDHKQPRKHRVVVDGKGGKGKRDGDLKDSKKHLNKCFEDEMVDGWPKWLVDNVPIQSLAGLVPKSAESYKMIDKVGQGTYSNVYKALDRDTGDIVALKKVRFNTSEPESIKFMAREITILQKLDHPNVVKLKGLATSRMQYSIYLVFDFMPTDLSRIITRPDERLTEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLINKNGMLQIADFGLANYYSINQQQPLTNRVVTLWYRAPELLLGSTDYGIGIDLWSAGCLLAEMFRGVPIMPGRTEVEQLHRIFRLCGTPSQEYWKKLKLSTTFIPPKSYRPSLVETFKDLPPSSLGLLCTLLALDPSFRGSASKALKNQFFFTSPLACDLSGLPTIYKEDDENIQAKEQIKYINSKIRRSRTFMERRKNLSSNKPIEPTISSKEVLRSTNAEAETYVPSQEPGSATSSTSSSVNQAGIGDHSPLFISPFLGSDQKLPHKIHSRHANIGEKNIKNLPPLSKSKPNVSKKDDSRYRTDQIFRSTSTREFRKLKTEENLVFD	587

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g04998	587	MobiDBLite	consensus disorder prediction	453	504	-	-
	Trre2g04998	587	PANTHER	CELL DIVISION PROTEIN KINASE	125	414	-	-
	Trre2g04998	587	Gene3D	Transferase(Phosphotransferase) domain 1	210	449	-	-
	Trre2g04998	587	MobiDBLite	consensus disorder prediction	10	25	-	-
	Trre2g04998	587	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	247	259	IPR008271	GO:0004672\|GO:0006468
	Trre2g04998	587	SMART	serkin_6	127	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g04998	587	ProSiteProfiles	Protein kinase domain profile.	127	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g04998	587	MobiDBLite	consensus disorder prediction	535	565	-	-
	Trre2g04998	587	MobiDBLite	consensus disorder prediction	461	504	-	-
	Trre2g04998	587	FunFam	probable serine/threonine-protein kinase At1g54610	114	209	-	-
	Trre2g04998	587	Pfam	Protein kinase domain	127	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre2g04998	587	ProSitePatterns	Protein kinases ATP-binding region signature.	133	156	IPR017441	GO:0005524
	Trre2g04998	587	SUPERFAMILY	Protein kinase-like (PK-like)	122	413	IPR011009	-
	Trre2g04998	587	Gene3D	Phosphorylase Kinase; domain 1	117	209	-	-
	Trre2g04998	587	MobiDBLite	consensus disorder prediction	551	565	-	-
	Trre2g04998	587	MobiDBLite	consensus disorder prediction	1	85	-	-
	Trre2g04998	587	MobiDBLite	consensus disorder prediction	47	85	-	-
	Trre2g04998	587	FunFam	Putative serine/threonine-protein kinase	210	447	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g04998	Trre-Chr2	57394988	57398241	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g04998	122	444	Core Cell Cycle Gene Families	AT5G10270	44.282	3.19e-92	291

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Trre2g04998		Pkinase	7.7e-66	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g04998	K08819		-	gmx:100776854	825.854