Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04980 ATGATCTCCAAAGCTCACCAACCTGATTCAATTGATGCATTGAAGTTTAAAATGTCTGTTAAAAAGGATCCTGATAAGTTCTTCATGTCTATCACTCAAGAAGAGAATAATCCATTTGACTATTTTCGTGCTCTATATGAGGGTTGTATTGCTGGAGGTGTTGCTGGTGTTGCTGTAGAAGCAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAGGTTGCGCGTGGTGGAGTAAATATTGTTTTCAAGGGTTTGTATTCTGGATTGGCTGGAAATCTTGCTGGTGTCTTACCAGCTTCTGCAATTTTTATTGGTGTGTATGAACCAGCAAAGCAGAAATTGCTAGAGATCTTCCCGGAGAATCTAAGCGCTCTGGCTCACATTGCTGCAGGTGCTATTGGAGGAGCTGCTTCTTCTCTTGTTCGTGTTCCAACTGAGGTTGTTAAGCAAAGGATACAGACCGGTCAATTCAAATCAACCCCAGCTGCTGTCCGTCTTATCATTGCTAATGAGGGTTTTAAAGGTCTTTATGCGGGATATGGATCTTTCTTATTGCGAGATTTACCATTTGATGCTTTAGAATTATGCATCTACGAACAGCTTCGTATCGGGTATAAACTAGCGGCAAAAAGAGATCTAAATGATCCAGAGAATGCTATGCTTGGGGCTTTTGCTGGTGCCATAACTGGAGCAGTTACAACTCCACTTGATGTAGTGAAAACCAGATTGATGGGAACCCAAAAATATTACAACGGCATCTGTGACTGTATTAGGACAATAGTTAAAGAAGAAGGAGCTCATGCTCTTTTTAAGGGTATTGGACCTAGAGTTCTATGGATAGGAATAGGTGGTTCTATATTTTTTGGTGTTCTTGAGAAGACAAAGAAAATTCTTGCTCAGAAGCACTCCCAAACTGATGCTCATAAGTGA 936 0.4081 MISKAHQPDSIDALKFKMSVKKDPDKFFMSITQEENNPFDYFRALYEGCIAGGVAGVAVEAALYPIDTIKTRLQVARGGVNIVFKGLYSGLAGNLAGVLPASAIFIGVYEPAKQKLLEIFPENLSALAHIAAGAIGGAASSLVRVPTEVVKQRIQTGQFKSTPAAVRLIIANEGFKGLYAGYGSFLLRDLPFDALELCIYEQLRIGYKLAAKRDLNDPENAMLGAFAGAITGAVTTPLDVVKTRLMGTQKYYNGICDCIRTIVKEEGAHALFKGIGPRVLWIGIGGSIFFGVLEKTKKILAQKHSQTDAHK 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04980 311 SUPERFAMILY Mitochondrial carrier 47 294 IPR023395 -
Trre2g04980 311 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 35 307 - -
Trre2g04980 311 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 47 311 - -
Trre2g04980 311 Pfam Mitochondrial carrier protein 124 204 IPR018108 -
Trre2g04980 311 Pfam Mitochondrial carrier protein 46 78 IPR018108 -
Trre2g04980 311 Pfam Mitochondrial carrier protein 219 303 IPR018108 -
Trre2g04980 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 299 IPR018108 -
Trre2g04980 311 Gene3D Mitochondrial carrier domain 46 311 IPR023395 -
Trre2g04980 311 PRINTS Mitochondrial carrier protein signature 181 201 IPR002067 GO:0055085
Trre2g04980 311 PRINTS Mitochondrial carrier protein signature 129 142 IPR002067 GO:0055085
Trre2g04980 311 PRINTS Mitochondrial carrier protein signature 142 156 IPR002067 GO:0055085
Trre2g04980 311 PRINTS Mitochondrial carrier protein signature 272 290 IPR002067 GO:0055085
Trre2g04980 311 PRINTS Mitochondrial carrier protein signature 230 248 IPR002067 GO:0055085
Trre2g04980 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 43 115 IPR018108 -
Trre2g04980 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 206 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04980 Trre-Chr2 57284475 57289818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04980 118 302 Chloroplast and Mitochondria Gene Families AT1G07030 29.688 4.73e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04980 K15111 - gmx:100800051 447.973