Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04972 ATGGAAAATATTAGTGTTAGTGTTACCTCTTTGTTCTTTTTCTTCATCTTTTTTAGCTTAACAAAGATGCAAGAAGTAACATCTCTTTCATCTGATGGACAAGCACTTCTTTCTCTTGCAACATCATCACCTTCTCTTCTTTCTTCATGGAACCCTTCAACCTCAACACCATGTTCATGGAAAGGTATAACTTGTTCACCACAATCTAGAGTAATTTCCCTTTCTATCCCTGATACTTTCCTTAACCTTACATCTTTACCACCTCAACTATCCTCTTTAACAATGCTTCAACTTCTTAACCTCTCTTCAACTAATCTCTCTGGCTCAATTCCACCTTCTTTTGGTCAACTCTCTCATCTTCAACTCCTTGACCTTTCCTCAAACTCTTTAACTGGTTCCATTCCTAATGAACTAGGAAACCTTTCATCTCTTCAGTTTCTTTTCTTGAACTCAAACAGATTAACAGGAACCATTCCTCAACAGCTTTCTAATCTTACTTCACTTGAAGTTCTTTGTCTTCAAGATAATCTTTTCAATGGTTCAATTCCTTCACAGTTAGGCTCTTTGAAATCTCTTCAGCAGTTTAGGATAGGTGGTAACCCTTTTCTCATAGGAGAACTACCTTCACAGTTAGGACTATTAACCAACCTCACAACATTTGGTGCAGCTGCAACTTCACTTTCAGGTTCCATTCCTTCAACATTTGGAAACTTGATCAATCTACAAACACTAGCACTTTATGATACTGAAATTTCTGGATCAATACCATCAGAACTTGGTTTATGTTCCGAGTTGAGAAATCTTTATTTACATATGAACAATCTCACTGGAGTTATTCCTCATGAATTAGGTAAGTTGCAAAAACTTACTAGTTTGCTTCTTTGGGGGAACTCATTATCTGGTAAAATCCCTTCTGAAATTTCAAACTGTTCATCATTAGTTATATTTGATGTATCTTCTAATGATCTATCTGGTGAAATACCTGGTGATTTTGGGAAGTTAGTTGTTCTTGAACAGCTTCATTTGTCTGATAATTCACTCACCGGCGAAATACCGTGGCAGTTGAGTAACTGCACTAGTCTTGCAACAGTTCAGCTTGATAAGAATCAGTTATCAGGTACAATTCCTTATCAGATTGGAAAATTGAAGGTTCTGCAAAGTTTTTTCTTGTGGGGGAATTTGGTTTCTGGAACTATACCTTCTTCATTTGGAAACTGTACTGAACTTTATGCACTTGATCTTTCAAGGAATAAGTTAACAGGTTCTATTCCAGAAGAGATTTTCAGTTTGCAGAAGCTGAGTAAGCTTCTGCTTCTTGGAAATTCATTAACAGGAAAGTTACCAGCAAATGTTGCAAATTGTCAGTCCTTGGTTAGGTTGAGAGTTGGAGAGAATCAGCTTTCAGGAGAGATTCCTAAAGAGATAGGAAAGTTGCAGAATCTGGTTTTTCTTGATTTGTATATGAATCATTTCTCCGGAAGATTACCGGTTGAGATTGCGAATATTACAGTTCTTGAGCTTTTAGATGTGCATAACAATTGCCTCGGAGGCGAAATTCCGTCGTTGATTGGAGAACTTGAAAATTTGGAGCAGCTTGATCTAAGTAGAAACAGTTTGAGAGGTGAAATCCCTTGGAGTTTCGGAAACTTGAGTTATTTGAATAAGCTTATTCTCAACAATAATTTGTTAACAGGTTCAATACCTAAATCTGTTAGAAATTTGCAGAAGCTAACTCTATTGGATTTGAGTTATAACAGCTTATCTGGTAGCATACCTTCAGAGATTGGTCATGTTACAAGCTTAACCATAAGTTTGGATTTGAGCTCAAATTCATTCACAGGTGAAATACCAGATTCTATGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCAAGGAACATGCTTCATGGAGGAATTAAGGTTCTTGGTTCTTTAACTAGTCTCACTTCACTCAATATCTCCTACAACAACTTCTCAGGTCCTATTCCAGTAACTCCATTCTTCAAAACTATAACTTCTGGTTCATATCTTCAGAACCGGAATCTGTGTCAGTCATTTGATGGTACTACATGTTCTTCAAGTCTGATTCAAAAGAATGGTTTAAAATCTGCGAAAACCGTAGCAATGATCACGATTATTTTAGCTTCGGTTACAATAATTGTCATTGCGTCGTGGATTCTGGTAACTCGTAGTAATCATCGATACAACGTTGAGAAAGCTTTGAGGATATCAGGTTCCGCGTCAGGAGCCGAGGATTTCTCTTATCCTTGGACTTTCATACCATTTCAGAAACTGAATTTCAGCATAGATAATATCTTGGATTGTTTGAAAGACGAAAATGTGATCGGAAAAGGTTGTTCTGGTGTTGTGTATAAGGCTGAGATGCCGCACGGAGAAGTGATAGCAGTGAAGAAGCTTTGGAAAACAAACAAAGGAGATGAAATGGTGGATTCTTTTGCTGCTGAGATTCAGATTCTCGGCTACATTCGGCATAGAAACATTGTGAGGCTCATAGGTTATTGTTCTAATGGCAGTGTTAAGCTTCTTCTCTACAACTACATCCAAAATGGTAATCTAAGACAGCTTTTGGAAGGGAATAGGAACTTAGACTGGGAAACTAGATACAAGATTGCTGTTGGTTCAGCTCAGGGTCTAGCTTACCTTCATCATGATTGTGTCCCATCAATTCTTCACAGAGATGTTAAGTGCAATAACATACTTCTAGATTCCAAATATGAGGCTTATATTGCAGATTTCGGTCTCGCAAAGCTAATGAATTCGCCAAATTATCATCATGCAATGTCCAGAGTTGCCGAGTATGGCTACACCATGAACATAACAGAGAAGAGTGATGTATACAGTTATGGAGTGGTTTTGCTAGAGATACTAAGCGGAAGAAGTGCCGTTGAATCTCAACACGTTGGAGACGGACAACACATAGTTGAATGGGTGAAGAAGAAAATGGCAAGCTTTGAACCAGCTGTATCAATACTAGATACAAAGCTTCAAAGTCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTCGGAATCGCTATGTTTTGTGTGAATTCTTCGCCGGTTGAACGTCCAACTATGAAGGAAGTTGTTGCATTACTGATGGAAGTTAAGTGTCAGCCTCATGAGGAGATGGGGAAAACATCTCAACCTTTAATCAAGCAGTCATCAACTCAATGCTGA 3207 0.3798 MENISVSVTSLFFFFIFFSLTKMQEVTSLSSDGQALLSLATSSPSLLSSWNPSTSTPCSWKGITCSPQSRVISLSIPDTFLNLTSLPPQLSSLTMLQLLNLSSTNLSGSIPPSFGQLSHLQLLDLSSNSLTGSIPNELGNLSSLQFLFLNSNRLTGTIPQQLSNLTSLEVLCLQDNLFNGSIPSQLGSLKSLQQFRIGGNPFLIGELPSQLGLLTNLTTFGAAATSLSGSIPSTFGNLINLQTLALYDTEISGSIPSELGLCSELRNLYLHMNNLTGVIPHELGKLQKLTSLLLWGNSLSGKIPSEISNCSSLVIFDVSSNDLSGEIPGDFGKLVVLEQLHLSDNSLTGEIPWQLSNCTSLATVQLDKNQLSGTIPYQIGKLKVLQSFFLWGNLVSGTIPSSFGNCTELYALDLSRNKLTGSIPEEIFSLQKLSKLLLLGNSLTGKLPANVANCQSLVRLRVGENQLSGEIPKEIGKLQNLVFLDLYMNHFSGRLPVEIANITVLELLDVHNNCLGGEIPSLIGELENLEQLDLSRNSLRGEIPWSFGNLSYLNKLILNNNLLTGSIPKSVRNLQKLTLLDLSYNSLSGSIPSEIGHVTSLTISLDLSSNSFTGEIPDSMSALTQLQSLDLSRNMLHGGIKVLGSLTSLTSLNISYNNFSGPIPVTPFFKTITSGSYLQNRNLCQSFDGTTCSSSLIQKNGLKSAKTVAMITIILASVTIIVIASWILVTRSNHRYNVEKALRISGSASGAEDFSYPWTFIPFQKLNFSIDNILDCLKDENVIGKGCSGVVYKAEMPHGEVIAVKKLWKTNKGDEMVDSFAAEIQILGYIRHRNIVRLIGYCSNGSVKLLLYNYIQNGNLRQLLEGNRNLDWETRYKIAVGSAQGLAYLHHDCVPSILHRDVKCNNILLDSKYEAYIADFGLAKLMNSPNYHHAMSRVAEYGYTMNITEKSDVYSYGVVLLEILSGRSAVESQHVGDGQHIVEWVKKKMASFEPAVSILDTKLQSLPDQMVQEMLQTLGIAMFCVNSSPVERPTMKEVVALLMEVKCQPHEEMGKTSQPLIKQSSTQC 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04972 1068 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 306 1042 - -
Trre2g04972 1068 Gene3D Ribonuclease Inhibitor 183 278 IPR032675 -
Trre2g04972 1068 Pfam Protein kinase domain 779 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04972 1068 SMART LRR_typ_2 526 549 IPR003591 -
Trre2g04972 1068 SMART LRR_typ_2 165 189 IPR003591 -
Trre2g04972 1068 SMART LRR_typ_2 334 358 IPR003591 -
Trre2g04972 1068 SMART LRR_typ_2 93 116 IPR003591 -
Trre2g04972 1068 SMART LRR_typ_2 117 140 IPR003591 -
Trre2g04972 1068 SMART LRR_typ_2 141 164 IPR003591 -
Trre2g04972 1068 SMART LRR_typ_2 623 650 IPR003591 -
Trre2g04972 1068 SMART LRR_typ_2 286 310 IPR003591 -
Trre2g04972 1068 SMART LRR_typ_2 238 262 IPR003591 -
Trre2g04972 1068 SMART LRR_typ_2 406 430 IPR003591 -
Trre2g04972 1068 SMART LRR_typ_2 574 598 IPR003591 -
Trre2g04972 1068 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Trre2g04972 1068 Gene3D Ribonuclease Inhibitor 375 471 IPR032675 -
Trre2g04972 1068 Gene3D Ribonuclease Inhibitor 279 374 IPR032675 -
Trre2g04972 1068 PRINTS Leucine-rich repeat signature 120 133 - -
Trre2g04972 1068 PRINTS Leucine-rich repeat signature 526 539 - -
Trre2g04972 1068 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 855 1060 - -
Trre2g04972 1068 ProSiteProfiles Protein kinase domain profile. 777 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04972 1068 Gene3D Phosphorylase Kinase; domain 1 754 854 - -
Trre2g04972 1068 SMART serkin_6 777 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04972 1068 Gene3D Transferase(Phosphotransferase) domain 1 855 1064 - -
Trre2g04972 1068 ProSitePatterns Protein kinases ATP-binding region signature. 783 806 IPR017441 GO:0005524
Trre2g04972 1068 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 432 696 - -
Trre2g04972 1068 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672|GO:0006468
Trre2g04972 1068 Pfam Leucine Rich Repeat 528 550 IPR001611 GO:0005515
Trre2g04972 1068 Pfam Leucine rich repeat 385 443 IPR001611 GO:0005515
Trre2g04972 1068 Pfam Leucine rich repeat 96 154 IPR001611 GO:0005515
Trre2g04972 1068 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Trre2g04972 1068 SUPERFAMILY L domain-like 369 690 - -
Trre2g04972 1068 SUPERFAMILY L domain-like 42 395 - -
Trre2g04972 1068 Gene3D Ribonuclease Inhibitor 472 567 IPR032675 -
Trre2g04972 1068 Gene3D Ribonuclease Inhibitor 568 694 IPR032675 -
Trre2g04972 1068 Gene3D Ribonuclease Inhibitor 30 182 IPR032675 -
Trre2g04972 1068 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 29 185 - -
Trre2g04972 1068 SUPERFAMILY Protein kinase-like (PK-like) 762 1043 IPR011009 -
Trre2g04972 1068 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 758 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04972 Trre-Chr2 57173044 57176653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04972 28 1062 Receptor kinase-like Gene Family AT5G56040 44.759 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre2g04972 Pkinase 4.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04972 - - tpra:123903867 1919.05