Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04961 ATGGCAGCTGTGATTTCTTCACCTATGGCTCAGTCTCCGACTGTTGTGGCTCCGGCGACGGCGGCATTGACAACTGGAGGGCCATTTGCGAATGCTTCGCTTTATGTAGGTGATCTGGAAGGGAGTGTGAATGAGGGACAACTTTTTGATCTGTTCAGCCAAGTTGCTCAGGTTGTCTCAATTAGGGTTTGTAGGGATCAGACTAGACGATCCTCTCTCGGTTACGCTTATGTCAATTTCACCAATGCTCAAGATGCGGCCAATGCGAAGGAACTTCTGAACTTCACTCCTCTAAATGGGAAACCCATTCGTATTATGTTTTCTCAAAGAGATCCAAGTGTTCGGAAGAGTGGATCTGGCAATGTGTTCATCAAGAACTTGGACACATCCATTGATCACAAGGCATTACATGACACTTTTGCTGCCTTTGGCACTGTGCTGTCTTGTAAGGTGGCTCTTGATAGTAGTGGTCAGTCAAAAGGGTACGGTTTCGTACAGTTTGAACATGAAGAAGCTGCGAAGAGTGCCATCAAACAGCTGAATGGCATGTTGATCAATGATAAACAAGTCTATGTTGGATTTTTTGTTCGCCACCAGGAAAGGATTAGGACAAATGGATCACCCAAGTTCACTAATGTCTTTGTTAAAAATCTTTCTGAAACGCTAAATGATGAAGACCTGAAGAAGTTGTTTGGCCCCTTTGGTGTGATAACTAGTGCAACAATCATGAAAGATGCGAATGGTAAATCTAGATGCTTTGGTTTTGTCAATTTTCAGAGTTCAGATTCAGCAGCTGCAGCAGTTGAGAAGTTAAATGGGACCATCAATGATGCCAAGGTTTTATTTGTGGGGAGAGCTCAGAGGAAAGCAGAAAGAGAGCATGAGTTGAAAGCTAAATTTGAGCAGGAAAGAATCAGTAGATATGAGAAACTACAGGGGGCTAATTTGTACTTGAAAAACCTTGATGATGATTTTACTGATGAAAAGTTGAAAGATTTATTTTCTGAATTTGGAACCATAACATCTTGTAGGGTGATGTTGGATTCCCATGGTCATAGCAAGGGTTCTGGTTTCGTGGCCTTTTCTACTCCCGAGGAGGCAAATAAAGCATTGAATGAAATGAATGGAAAGCTGGTTGGAAGGAAGCCTCTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAGAGGAAGGCCCAATTGCAGGCTCATTTTGCTCAAATCCGTGCTCCTGGTGGATTGGCACCGTTGGCTGGAGGAATTGCTGGATACCATCCAGGGGCACCGAGACTTGCCCCTCAGCAACTGTATTTTGGTCAAGGCACACCTGGTTTCATACCACCTCAGCCTGCTGGATTTGGTTTCCAGCAGCAAATTTTGCCTGGAATTCGGCCTGGTGTTGCTCCAAATTTTGTTATGCCGTATCAACTCCAAAGACAGGGCCAAAATGGGCAAAGGATAGGTGCTCGTCGAAATGGAAATCTCCAACACGTGCACCAGAACCAAATGATGCATCGTAACTCCAACCAAGGTTTTAGATACATGGCTAACAATCGAAATGGCATGGATCCGGCTGGAGTTCCTCAAGGTCTAGCTGGTCCAATGTTGCCTTTGACATTTGATGGTTCTGGAGTTACTGCACCTATTGATAATCAGCGTCCAGGGTCTACATCACTTGCCTCAGCTTTAGCTTCTGCAACTCCAGAAAACCAGCGCATGATGTTGGGTGAACATCTATATCCTCTTGTGGACCGGCTTACACCAAACCAACATACTGCAAAGGTGACAGGGATGCTGCTTGAAATGGATCAATCAGAAGTAATTCATCTTATTGAATCTCCCGATGACCTGAAAACAAAGGTTTCTGAGGCATTGCAGGTCCTTCATAATGCTGCATCGGGATCTGAAGTTGGTGATCAGCTTGGTTCGTTGTCATTAAATGAATGA 1941 0.4451 MAAVISSPMAQSPTVVAPATAALTTGGPFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELLNFTPLNGKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFEHEEAAKSAIKQLNGMLINDKQVYVGFFVRHQERIRTNGSPKFTNVFVKNLSETLNDEDLKKLFGPFGVITSATIMKDANGKSRCFGFVNFQSSDSAAAAVEKLNGTINDAKVLFVGRAQRKAEREHELKAKFEQERISRYEKLQGANLYLKNLDDDFTDEKLKDLFSEFGTITSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRKEERKAQLQAHFAQIRAPGGLAPLAGGIAGYHPGAPRLAPQQLYFGQGTPGFIPPQPAGFGFQQQILPGIRPGVAPNFVMPYQLQRQGQNGQRIGARRNGNLQHVHQNQMMHRNSNQGFRYMANNRNGMDPAGVPQGLAGPMLPLTFDGSGVTAPIDNQRPGSTSLASALASATPENQRMMLGEHLYPLVDRLTPNQHTAKVTGMLLEMDQSEVIHLIESPDDLKTKVSEALQVLHNAASGSEVGDQLGSLSLNE 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04961 646 Gene3D - 28 120 IPR012677 -
Trre2g04961 646 SMART poly_2 565 629 IPR002004 GO:0003723
Trre2g04961 646 Gene3D - 312 410 IPR012677 -
Trre2g04961 646 SUPERFAMILY PABC (PABP) domain 468 631 IPR036053 GO:0003723
Trre2g04961 646 FunFam Polyadenylate-binding protein 297 402 - -
Trre2g04961 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
Trre2g04961 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Trre2g04961 646 PANTHER RNA BINDING PROTEIN 31 94 - -
Trre2g04961 646 Gene3D - 121 204 IPR012677 -
Trre2g04961 646 FunFam Polyadenylate-binding protein 25 120 - -
Trre2g04961 646 SUPERFAMILY RNA-binding domain, RBD 120 292 IPR035979 GO:0003676
Trre2g04961 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 383 IPR000504 GO:0003723
Trre2g04961 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 275 IPR000504 GO:0003723
Trre2g04961 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Trre2g04961 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Trre2g04961 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Trre2g04961 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Trre2g04961 646 SUPERFAMILY RNA-binding domain, RBD 310 403 IPR035979 GO:0003676
Trre2g04961 646 Gene3D - 552 631 - -
Trre2g04961 646 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 32 626 IPR006515 GO:0003723
Trre2g04961 646 CDD RRM3_I_PABPs 210 289 - -
Trre2g04961 646 Coils Coil 283 303 - -
Trre2g04961 646 CDD RRM4_I_PABPs 313 391 - -
Trre2g04961 646 FunFam Polyadenylate-binding protein 201 296 - -
Trre2g04961 646 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 631 IPR002004 GO:0003723
Trre2g04961 646 FunFam Polyadenylate-binding protein 549 632 - -
Trre2g04961 646 SUPERFAMILY RNA-binding domain, RBD 28 117 IPR035979 GO:0003676
Trre2g04961 646 FunFam Polyadenylate-binding protein 121 194 - -
Trre2g04961 646 CDD RRM2_I_PABPs 118 193 IPR045305 -
Trre2g04961 646 SMART rrm1_1 212 284 IPR000504 GO:0003723
Trre2g04961 646 SMART rrm1_1 315 387 IPR000504 GO:0003723
Trre2g04961 646 SMART rrm1_1 121 193 IPR000504 GO:0003723
Trre2g04961 646 SMART rrm1_1 33 106 IPR000504 GO:0003723
Trre2g04961 646 Pfam Poly-adenylate binding protein, unique domain 561 626 IPR002004 GO:0003723
Trre2g04961 646 Gene3D - 205 311 IPR012677 -
Trre2g04961 646 SMART rrm2_1 121 193 IPR003954 GO:0003676
Trre2g04961 646 SMART rrm2_1 315 387 IPR003954 GO:0003676
Trre2g04961 646 SMART rrm2_1 212 283 IPR003954 GO:0003676
Trre2g04961 646 SMART rrm2_1 33 106 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04961 Trre-Chr2 57110675 57114700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04961 1 626 Eukaryotic Initiation Factors Gene Family AT1G22760 57.098 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04961 K13126 - gmx:100783163 1047.73