Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04956 ATGGAAGCTGTGACTCAGTCTGCGACTGTTGTGGCTCCGGCGATGGCGGCGGCATTGACAACTGGAGGGCCATTTGGGAATAGATCGCTTTATGTTGGTGATCTAGAAGGGAGTGTTGATGAGACACAACTTTTTGATCTGTTCAGCCAAGTTGCTCAGGTTGTATCAATTAGGGTTTGTAGGGATCAGACTAGACGATCCTCTCTCGGTTACGCTTATGTTAACTTCACAAATGCTCAAGATGCGGCAAATGCGAAGGAACTTTTGAACTTCACTCCGCTGAATGGGAAACCCATTCGTATTATGTTTTCTCAACGAGATCCAAGTGTTCGAACAAGTGGATCTGGCAATGTGTTTGTTAAGAATCTGGAAAAATCGATTGATCACAAGGCATTGCACGACATTTTTGCTTACTTTGGCTCTATACTGTCGTGTAAAGTGGCTCTTGACGGCAATGGTCAGTCGAAAGGGTATGGTTTTATACAGTTTGACAACGAAGAATCTGCGAAGAATGCCATCGAACAGTTGAATGGCATGTTGCTAAATGATAAACAAGTCTATGTTGGATCTTTCGTTTGCCACCGGGAAAGAGCTAGGACCAATCAATCACCCAAGTTTACTAATGTGTTTATAAAAAATCTTTCTGAGACACTAACTGATGAAGAATTGAAGCAGCTATTTAGCCATTTTGGCACGATAACAAGTGCAAGAGTCATGAAAGATACAAATGGGAAATCAAGATGCTTCGGTTTTGTGAACTTTAAGAGTCCAGATTCTGCTGCTGCTGCAATTGAGAAGTTAAATGGAACTACTGTCAATGGTGACAAAGTTCTATTTGTGGGGAGAGCTGAGAGCAAAGCAGAAAGGGAACAAAAGCTGAAAGCCAAATTAGAGCAGGAAAGACTTAGTAGATACGAGAAATTACAGAGGGCTAACCTGTACTTGAAAAATCTTGATGATGATTTTACTAATGAAAATTTGAAAGATATGTTTTCTAAGTACGGAACCATAACATCTTGCAAGGTGATGTTGGATTCTCGTGGTCGTAGTACTGGTTCTGGTTTCGTGGCATTTTCAACTCCAGAGGAAGCAAACAAAGCGATGAATGAAATGAATGGCAAGTTTGTTGGAACAAAACCTTTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAGAGGAAGGCCCAATTGCAGGCTCATTTTGCTGAAATGGTTGCCCCTGGTGGATTGACACTGCCAGCTGCAGGAATTCATGCATACTATCCAGAGGCATCGAGACTTGCCTCTCAACAGGGTCAAGGCACATATGACTTCATACCACCTCAGCCTGCTGGTGGAATGCAGCCTGGCTTTGCTCCAAATTTTGTTGTGCCGTATCAACTGCAGAGACAGGGTCGAAAATGGCAAAGGAAAGGTGCTCAACGAAATGGAAATCTCCAATACGCGCACCAGAACAAACAGATGATGCATCGTAACTCGAATCATGGTTTTAGACACATGGCTAACAATCGAAATGGCATGGATTCGTCTGGAGTTCCTCATAGTCTAGCTGGTCCAATGTTGCCTATCACATTTGATGGTTCTGGAGTTACTGCACCTATTGATAATCAGCATCCCGGGTCTACATCACTTGCCTCAGCTTTAGCTTCTGCAACTCCAGAAAACCAGCTCATGATGTTGGGCGAACATCTTTATCCCCTTGTGGACCGTCTTACAGCAAAGGAACTTACAACAAAGGTGACAGGGATGTTGCTTGAAATGGACCAGGCAGAAGTGATTAATCTCATTGAATCTCCTGATGACCTGAAAACAAAGGTTTCTGAGGCATTGCAAGTCCTTCATGACGCTGCATCGGAATCTAAAGCTGGTGATCAACTTGGTTCGTTGTCATTGAACGAATGA 1899 0.4329 MEAVTQSATVVAPAMAAALTTGGPFGNRSLYVGDLEGSVDETQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELLNFTPLNGKPIRIMFSQRDPSVRTSGSGNVFVKNLEKSIDHKALHDIFAYFGSILSCKVALDGNGQSKGYGFIQFDNEESAKNAIEQLNGMLLNDKQVYVGSFVCHRERARTNQSPKFTNVFIKNLSETLTDEELKQLFSHFGTITSARVMKDTNGKSRCFGFVNFKSPDSAAAAIEKLNGTTVNGDKVLFVGRAESKAEREQKLKAKLEQERLSRYEKLQRANLYLKNLDDDFTNENLKDMFSKYGTITSCKVMLDSRGRSTGSGFVAFSTPEEANKAMNEMNGKFVGTKPLFVAVAQRKEERKAQLQAHFAEMVAPGGLTLPAAGIHAYYPEASRLASQQGQGTYDFIPPQPAGGMQPGFAPNFVVPYQLQRQGRKWQRKGAQRNGNLQYAHQNKQMMHRNSNHGFRHMANNRNGMDSSGVPHSLAGPMLPITFDGSGVTAPIDNQHPGSTSLASALASATPENQLMMLGEHLYPLVDRLTAKELTTKVTGMLLEMDQAEVINLIESPDDLKTKVSEALQVLHDAASESKAGDQLGSLSLNE 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04956 632 FunFam Poly(A) binding protein cytoplasmic 1 like 303 392 - -
Trre2g04956 632 SMART poly_2 551 615 IPR002004 GO:0003723
Trre2g04956 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Trre2g04956 632 SMART rrm1_1 29 102 IPR000504 GO:0003723
Trre2g04956 632 SMART rrm1_1 208 281 IPR000504 GO:0003723
Trre2g04956 632 SMART rrm1_1 117 189 IPR000504 GO:0003723
Trre2g04956 632 SMART rrm1_1 312 384 IPR000504 GO:0003723
Trre2g04956 632 FunFam Polyadenylate-binding protein 114 197 - -
Trre2g04956 632 SUPERFAMILY RNA-binding domain, RBD 308 396 IPR035979 GO:0003676
Trre2g04956 632 FunFam Polyadenylate-binding protein 21 113 - -
Trre2g04956 632 Coils Coil 280 300 - -
Trre2g04956 632 CDD RRM3_I_PABPs 206 286 - -
Trre2g04956 632 SUPERFAMILY RNA-binding domain, RBD 27 190 IPR035979 GO:0003676
Trre2g04956 632 Gene3D - 202 307 IPR012677 -
Trre2g04956 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Trre2g04956 632 CDD RRM2_I_PABPs 114 189 IPR045305 -
Trre2g04956 632 PANTHER RNA BINDING PROTEIN 29 90 - -
Trre2g04956 632 CDD RRM4_I_PABPs 312 388 - -
Trre2g04956 632 Gene3D - 308 407 IPR012677 -
Trre2g04956 632 Gene3D - 24 116 IPR012677 -
Trre2g04956 632 Gene3D - 537 617 - -
Trre2g04956 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Trre2g04956 632 Gene3D - 117 201 IPR012677 -
Trre2g04956 632 SUPERFAMILY RNA-binding domain, RBD 202 293 IPR035979 GO:0003676
Trre2g04956 632 FunFam Poly(A) binding protein cytoplasmic 1 like 199 289 - -
Trre2g04956 632 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 539 617 IPR002004 GO:0003723
Trre2g04956 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 188 IPR000504 GO:0003723
Trre2g04956 632 Pfam Poly-adenylate binding protein, unique domain 547 612 IPR002004 GO:0003723
Trre2g04956 632 SUPERFAMILY PABC (PABP) domain 483 624 IPR036053 GO:0003723
Trre2g04956 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Trre2g04956 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Trre2g04956 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 276 IPR000504 GO:0003723
Trre2g04956 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 380 IPR000504 GO:0003723
Trre2g04956 632 SMART rrm2_1 29 102 IPR003954 GO:0003676
Trre2g04956 632 SMART rrm2_1 117 189 IPR003954 GO:0003676
Trre2g04956 632 SMART rrm2_1 312 384 IPR003954 GO:0003676
Trre2g04956 632 SMART rrm2_1 208 280 IPR003954 GO:0003676
Trre2g04956 632 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 29 612 IPR006515 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04956 Trre-Chr2 57092547 57096330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04956 27 612 Eukaryotic Initiation Factors Gene Family AT1G22760 54.545 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04956 K13126 - gmx:100783163 910.212