Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04944 ATGGGTGCGGTTTCGGAATCTGCTTTCAGTGAGGTGATGTCATCCATGCCTGGTTTTCGCTTCCATCCTACAGATGAGGAGTTGGTGATGTACTATCTAAAAAGGAAGATTTGTGGGAAGAAGTTGAAGTTCAACGTTATTTGTGAAACCGATGTGTACAAATGGGATCCTGAGGATTTGCCTGATCAATCTTTCCTGAAAACTGGAGATAGGCAATGGTTCTTTTTCTGTCACAGAGATAGGAAGTATCCTAATGGTGGAAGGTCTAACCGAGCAACTAGACATGGATACTGGAAAGCAACAGGAAAAGATAGAAATGTGATATTTAATTCTCGGTCAGTTGGAGTTAAAAAGACACTAGTTTTCTATTTCGGCAGAGCTCCTAATGGTGAACGAACTGACTGGGTTATGCATGAATACACCGTGGATGAAGAAGAGCTTAAGAGATGCCATGATGTTAAGGAATATTATGCTCTTTACAAGGTGTTCAAGAAAAGTGGACCTGGTCCTAAGAATGGCGAACAATATGGTGCACCATTTAGAGAAGAAGACTGGGCAGATGACAATGTTGTAGATTTTAATGTTAAATCAGCTCAGCTGGGGGCTCCAAGGGCTGTTGTTAACACTTTTACTGATCAGCCACAGCCGTTGGCTGTTATTAACGCTTCTACCGATCAGCTCCAGCCGTTGTCAGATGATGAAATTGACAAAATCTTTAAAGGGGTTTTTGATATTGAACCTGTCGTTGACCAGCAACATGTTAATGGTTATCCCGACTTTCCTCAGGTTGTTGCTGAAGAAACACAAAGTATGGTCATGGGTCAATTCTCTGAGGCCATGATATTCCCTGACGCAAGTGGGAAATTGCAATCTAGCGGTCAGCATTATGATGTACAGCAGCGCGACTTTGACTTCAATCACTCAGCTTCTTCTCACTTATCTGAAGCACCTGAGGTCACTTCTGCTCCCAACATTCAAAGTGATGAGGGACTTGTCTTTTACGAGGACGGCTTCTTGGAAATTAATGATCTAGTTGATACTGAACCAGCATTTTCAAATACGGAAAAGTTTAATATTGATCTCATTGATAACCTCCAATTTGAAGATGGGTTAAGTGAATTTGATCTGTACCAAGATGCAGAGATGTTTCTTTGTGGCAACGAAACTGTTTCACATGCACATATGAATAATTTTGGCAGCAGTATTGAAAATCAGAGTTACCAGTTGCTATCCAATCCAGAGGTCGTCAATCAAACTGTTGATGAATTCTGGATGCATGTCGAAAGAAACACACGGAGTACAACAGAAGACTACGCTGGTTCTTTCTCTCAAACAAATCCAGGTGTTGTGTATGACTCTGTCAGCTTTCCTACTGAAAGCACTGAAAATCAAAGAAGCACTGTGGAAGATGTTTCTACTACAACTACAAGTAGATTCTCCTCTGCTCTCTGGGCCTTTGTTGATTCAATACCTACCACACCAGCATCAGCAGCCGAAAATCCTTTGGTGAATCGGGCTTTGAATAGAATGACTAGCTTCAGCAGGGTGAAGATCAATCCCACCAACATTGCTGCAGGTATTGATACTACAACTATGAAGATACCAGGCAGAAAGGGATTCTCATTCCTTTTCTTCCCGATTCTTATTGCTTTATGTGCTTTCTTGTGTTATTCTATTGGAAATTTAAGACTATTAGGGAGATGCATCTCCCCTTGA 1716 0.4138 MGAVSESAFSEVMSSMPGFRFHPTDEELVMYYLKRKICGKKLKFNVICETDVYKWDPEDLPDQSFLKTGDRQWFFFCHRDRKYPNGGRSNRATRHGYWKATGKDRNVIFNSRSVGVKKTLVFYFGRAPNGERTDWVMHEYTVDEEELKRCHDVKEYYALYKVFKKSGPGPKNGEQYGAPFREEDWADDNVVDFNVKSAQLGAPRAVVNTFTDQPQPLAVINASTDQLQPLSDDEIDKIFKGVFDIEPVVDQQHVNGYPDFPQVVAEETQSMVMGQFSEAMIFPDASGKLQSSGQHYDVQQRDFDFNHSASSHLSEAPEVTSAPNIQSDEGLVFYEDGFLEINDLVDTEPAFSNTEKFNIDLIDNLQFEDGLSEFDLYQDAEMFLCGNETVSHAHMNNFGSSIENQSYQLLSNPEVVNQTVDEFWMHVERNTRSTTEDYAGSFSQTNPGVVYDSVSFPTESTENQRSTVEDVSTTTTSRFSSALWAFVDSIPTTPASAAENPLVNRALNRMTSFSRVKINPTNIAAGIDTTTMKIPGRKGFSFLFFPILIALCAFLCYSIGNLRLLGRCISP 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04944 571 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 286 - -
Trre2g04944 571 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Trre2g04944 571 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Trre2g04944 571 ProSiteProfiles NAC domain profile. 15 165 IPR003441 GO:0003677|GO:0006355
Trre2g04944 571 FunFam Nac domain-containing protein 86 24 168 - -
Trre2g04944 571 Gene3D NAC domain 24 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04944 Trre-Chr2 57014062 57017465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04944 6 569 NAC Transcription Factor Family AT1G34190 43.002 9.09e-135 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre2g04944 NAM 1.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04944 - - mtr:25485018 898.271