Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre2g04943 | ATGGCTTCGTCTCAGTCTCAGCATCGTTGTGTGTTTGTTGGGAACATACCGTATGATGCAACAGAGGAACAGCTTATTGAAATTTGCCAAGAGGTCGGTCCTGTAGTTTCTTTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACGGCTTTAAGTGCTCGTAGGAATCTTCAGGGCTATGAAATTAATGGGCGTCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGACTGATAGAAATAAAGATCAGGGTCGCAGGGGACCAGGAATGACATCAACTGTTGATCCTCAGAAACAGGCAGGCATCCCGGCTGTCCAAGGCGATTCTGCTCAAGCAGCTCAACATCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACTGCAGCTCTAGGTGGCGCTCAGACTAGTATCCAGTCAAATCAAAATGGTTTGCAGAACCAGTCAGCATTGGCAAATGATCCTTTAACTTTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACTGAGATAATCTCCGAGCTTAAGGGAATGGCTACACATAACAAGGAGATGTCTCGCCAGCTTTTGCTTTCAAGGCCACAGTTGCCTAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGGATGGTCACCCCTCAAATGTTACAAATGCCAAACCTTAGACAAGTTTCGGATCAAACCTCACAGTCTTTAATGAATGAAGGCCTCCTTGGCCAGGCTCAGCAAACACTGGTTCAAACTGTGGCTGCTCTACCTCCTTATGGACAGAGCAAATTGCAGTCTGGCTTGACACCTTACATTCAAGAAGGCCAAGTCAACAATCTACCTCATAACCCTTTGGCTCCTAATCAATTAACCACAAATCCAAAGCCTCCAATGCAGCCTCGAATTCCCCTTCAACATCACCCAAGCAACCATTTTGTACAGCTCGGAACAGGACAGTCTAATTTAATGCATCCTTCTGTATGCCCCCCGCCTTTGGGGAATTTGTCTGTTAGGCCTCCAATTCAACCAGCAAATTCAACAGCTTTGAACCAGCAAACACATGCCTCATTCCTACAGCATCCAGTACGTGTTGGAAACTCAACTGTCTCACATAATATTCAAATGGTTCGTCCAGATGCCAGCTTTCAGGCAGGCCCCTCCATGTCATCTGGTATTTCTCAGTTATTTAGTAAGGATGTTAGTAGTAAATATTCAAACATGTCTTCGGGAGTAGAGATTACAGGCATGGTTCGTGATATTCCAGAATCTTTTACTCGACCATCAAAGCTCACTAAATTGAATGATGGAAGGGGATCCTCTCTCTCTGCTGGGACTTCAGACATGCCTGTCTCCAATGGATCATCCCATATGCCTGGAAGTAGTTCAATACCTGTACCTGCAGTTCCTAGAGCAGAAGTGCGGCATTCTGATCAACAATCTTCACAGTCACAGCTTCCATCTGATGTGGAGTCTGCTTTATTACAACAAGTGTTGAATCTAACACCAGAACAATTGAGTTCCCTGCCACCAGATCAGCAACAACAGGTCATTCAGCTCCAACAAGCTCTTAAACGAGATCAGATGCAGCACTCATAA | 1632 | 0.4473 | MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNKDQGRRGPGMTSTVDPQKQAGIPAVQGDSAQAAQHQPIGLHIAITAAAVMTAALGGAQTSIQSNQNGLQNQSALANDPLTLHLAKMSRSQLTEIISELKGMATHNKEMSRQLLLSRPQLPKALFQAQIMLGMVTPQMLQMPNLRQVSDQTSQSLMNEGLLGQAQQTLVQTVAALPPYGQSKLQSGLTPYIQEGQVNNLPHNPLAPNQLTTNPKPPMQPRIPLQHHPSNHFVQLGTGQSNLMHPSVCPPPLGNLSVRPPIQPANSTALNQQTHASFLQHPVRVGNSTVSHNIQMVRPDASFQAGPSMSSGISQLFSKDVSSKYSNMSSGVEITGMVRDIPESFTRPSKLTKLNDGRGSSLSAGTSDMPVSNGSSHMPGSSSIPVPAVPRAEVRHSDQQSSQSQLPSDVESALLQQVLNLTPEQLSSLPPDQQQQVIQLQQALKRDQMQHS | 543 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre2g04943 | 543 | Gene3D | - | 498 | 539 | IPR038192 | - | |
| Trre2g04943 | 543 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 9 | 87 | IPR000504 | GO:0003723 | |
| Trre2g04943 | 543 | FunFam | Cleavage stimulating factor 64 | 160 | 235 | - | - | |
| Trre2g04943 | 543 | MobiDBLite | consensus disorder prediction | 81 | 99 | - | - | |
| Trre2g04943 | 543 | CDD | RRM_CSTF2_RNA15_like | 9 | 85 | - | - | |
| Trre2g04943 | 543 | Gene3D | - | 1 | 115 | IPR012677 | - | |
| Trre2g04943 | 543 | PANTHER | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 | 3 | 539 | - | - | |
| Trre2g04943 | 543 | MobiDBLite | consensus disorder prediction | 81 | 113 | - | - | |
| Trre2g04943 | 543 | FunFam | Cleavage stimulating factor 64 | 2 | 118 | - | - | |
| Trre2g04943 | 543 | SMART | rrm1_1 | 10 | 83 | IPR000504 | GO:0003723 | |
| Trre2g04943 | 543 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 105 | IPR035979 | GO:0003676 | |
| Trre2g04943 | 543 | Gene3D | - | 161 | 235 | - | - | |
| Trre2g04943 | 543 | FunFam | Related to Cleavage stimulation factor | 496 | 538 | - | - | |
| Trre2g04943 | 543 | MobiDBLite | consensus disorder prediction | 439 | 478 | - | - | |
| Trre2g04943 | 543 | Pfam | Transcription termination and cleavage factor C-terminal | 504 | 537 | IPR026896 | GO:0031124 | |
| Trre2g04943 | 543 | MobiDBLite | consensus disorder prediction | 439 | 473 | - | - | |
| Trre2g04943 | 543 | MobiDBLite | consensus disorder prediction | 517 | 543 | - | - | |
| Trre2g04943 | 543 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 11 | 81 | IPR000504 | GO:0003723 | |
| Trre2g04943 | 543 | Pfam | Hinge domain of cleavage stimulation factor subunit 2 | 164 | 233 | IPR025742 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre2g04943 | Trre-Chr2 | 56994394 | 57000542 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre2g04943 | 11 | 82 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 31.944 | 6.66e-06 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre2g04943 | K14407 | - | gmx:100794399 | 736.102 |