Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04942 ATGGCTTCGTCTCAGTCTCAGCATCGTTGTGTGTTTGTTGGGAACATACCGTATGATGCAACAGAGGAACAGCTTATTGAAATTTGCCAAGAGGTCGGTCCTGTAGTTTCTTTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACGGCTTTAAGTGCTCGTAGGAATCTTCAGGGCTATGAAATTAATGGGCGTCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGACTGATAGAAATAAAGATCAGGGTCGCAGGGGACCAGGAATGACATCAACTGTTGATCCTCAGAAACAGGCAGGCATCCCGGCTGTCCAAGGCGATTCTGCTCAAGCAGCTCAACATCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACTGCAGCTCTAGGTGGCGCTCAGACTAGTATCCAGTCAAATCAAAATGGTTTGCAGAACCAGTCAGCATTGGCAAATGATCCTTTAACTTTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACTGAGATAATCTCCGAGCTTAAGGGAATGGCTACACATAACAAGGAGATGTCTCGCCAGCTTTTGCTTTCAAGGCCACAGTTGCCTAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGGATGGTCACCCCTCAAATGTTACAAATGCCAAACCTTAGACAAGTTTCGGATCAAACCTCACAGTCTTTAATGAATGAAGGCCTCCTTGGCCAGGCTCAGCAAACACTGGTTCAAACTGTGGCTGCTCTACCTCCTTATGGACAGAGCAAATTGCAGTCTGGCTTGACACCTTACATTCAAGAAGGCCAAGTCAACAATCTACCTCATAACCCTTTGGCTCCTAATCAATTAACCACAAATCCAAAGCCTCCAATGCAGCCTCGAATTCCCCTTCAACATCACCCAAGCAACCATTTTGTACAGCTCGGAACAGGACAGTCTAATTTAATGCATCCTTCTGTATGCCCCCCGCCTTTGGGGAATTTGTCTGTTAGGCCTCCAATTCAACCAGCAAATTCAACAGCTTTGAACCAGCAAACACATGCCTCATTCCTACAGCATCCAGTACGTGTTGGAAACTCAACTGTCTCACATAATATTCAAATGGTTCGTCCAGATGCCAGCTTTCAGGCAGGCCCCTCCATGTCATCTGGTATTTCTCAGTTATTTAGTAAGGATGTTAGTAGTAAATATTCAAACATGTCTTCGGGAGTAGAGATTACAGGCATGGTTCGTGATATTCCAGAATCTTTTACTCGACCATCAAAGCTCACTAAATTGAATGATGGAAGGGGATCCTCTCTCTCTGCTGGGACTTCAGACATGCCTGTCTCCAATGGATCATCCCATATGCCTGGAAGTAGTTCAATACCTGTACCTGCAGTTCCTAGAGCAGAAGTGCGGCATTCTGATCAACAATCTTCACAGCTTCCATCTGATGTGGAGTCTGCTTTATTACAACAAGTGTTGAATCTAACACCAGAACAATTGAGTTCCCTGCCACCAGATCAGCAACAACAGGTCATTCAGCTCCAACAAGCTCTTAAACGAGATCAGATGCAGCACTCATAA 1626 0.4471 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNKDQGRRGPGMTSTVDPQKQAGIPAVQGDSAQAAQHQPIGLHIAITAAAVMTAALGGAQTSIQSNQNGLQNQSALANDPLTLHLAKMSRSQLTEIISELKGMATHNKEMSRQLLLSRPQLPKALFQAQIMLGMVTPQMLQMPNLRQVSDQTSQSLMNEGLLGQAQQTLVQTVAALPPYGQSKLQSGLTPYIQEGQVNNLPHNPLAPNQLTTNPKPPMQPRIPLQHHPSNHFVQLGTGQSNLMHPSVCPPPLGNLSVRPPIQPANSTALNQQTHASFLQHPVRVGNSTVSHNIQMVRPDASFQAGPSMSSGISQLFSKDVSSKYSNMSSGVEITGMVRDIPESFTRPSKLTKLNDGRGSSLSAGTSDMPVSNGSSHMPGSSSIPVPAVPRAEVRHSDQQSSQLPSDVESALLQQVLNLTPEQLSSLPPDQQQQVIQLQQALKRDQMQHS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04942 541 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 537 - -
Trre2g04942 541 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Trre2g04942 541 Gene3D - 489 537 IPR038192 -
Trre2g04942 541 MobiDBLite consensus disorder prediction 81 99 - -
Trre2g04942 541 CDD RRM_CSTF2_RNA15_like 9 85 - -
Trre2g04942 541 Gene3D - 1 115 IPR012677 -
Trre2g04942 541 FunFam Cleavage stimulating factor 64 160 235 - -
Trre2g04942 541 MobiDBLite consensus disorder prediction 439 499 - -
Trre2g04942 541 Pfam Hinge domain of cleavage stimulation factor subunit 2 164 233 IPR025742 -
Trre2g04942 541 MobiDBLite consensus disorder prediction 81 113 - -
Trre2g04942 541 Gene3D - 161 235 - -
Trre2g04942 541 FunFam Cleavage stimulating factor 64 2 118 - -
Trre2g04942 541 Pfam Transcription termination and cleavage factor C-terminal 502 535 IPR026896 GO:0031124
Trre2g04942 541 SMART rrm1_1 10 83 IPR000504 GO:0003723
Trre2g04942 541 SUPERFAMILY RNA-binding domain, RBD 5 105 IPR035979 GO:0003676
Trre2g04942 541 FunFam Related to Cleavage stimulation factor 494 536 - -
Trre2g04942 541 MobiDBLite consensus disorder prediction 439 473 - -
Trre2g04942 541 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04942 Trre-Chr2 56994394 57000542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04942 11 82 Eukaryotic Initiation Factors Gene Family AT1G49760 31.944 6.34e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04942 K14407 - gmx:100794399 747.273