Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04939 ATGGAGATTCACTTCTTTTTATTATTTGCTACTCTATCCTTAATCATAATCCGGTTCTTTCTAAACCGCAAAAGAAACAAACCGCCCGGTCCAACCGGTTTACCCATAATCGGAAACCTCCATCAACTAGGCTCCGAACCTCACTGTTCCCTCTCTTCCCTCGCTAAAACATATGGCCCCATCATGTCCCTCCGTTTCGGCTCCGTCACCGTAACCGTCGCCTCCTCCCCTACAACCGCCCAAGAAATCCTCCAAAAAAACGACCAATCCTTCGCCAACCGCCCTATCCCAGAATCAGTCGCTGCTCAACCAAACGTCAACGACACCCTTGCTTGGGCACCCGCCGACTCACGGTGGCGTAACCGTCGCCGTATCTGCACAACTCAAATATTCACATCCCAACGTCTCGACCTCCTCCAACATCTCCGTCACCGGAAAGTTGAGCAACTGGTTCAACACCTTCACAAAAAAGCTGCTGAAAAAACAACAGTTGATATAGGTGAACTTGCTTTCGCTACCATGTTGAACTTGGTTTCTAACACGGTGTTTTCTGAGGATCTTGTTGACTCAGAATTTGAGAGTGCTGGTGAGTTTAAGGAGCTTGTGTGGAGAATTATGGAGGATGCTGGGAAAGTGAATGTTAGTGATTATTTTCCTGTGTTGAAGAGATTTGATTTGCAGGGTGTGAAGAGACATGTTAAGATTTCATATGTGAGATTGCATGAGATTTTTGATCGTATGATTAAGAAACGTGTTGAAGATAGAGAGAATTTGAGTGGTGATGGTGGTGGTGATTTTTTGGATGTGTTGCTTGATCACTGTCAACAAGATAAAGACTCTGTTTTTAGTGTTGAAAGCATCAAGCCATTGATTCTGGATTTATTTATAGCTGGAAGTGACACATCAGGATCAACAACAGAATGGGCAATGGCTGAACTTCTTCGCAATCCAAAAATAATGAAAAAAGCAAGAAATGAAGTGATTCAAGTAATTGGCAAATCCAACCAAGTCAAAGAATCAGACATTCCAACACTTCCTTACATCCAATCAATAGTCAAAGAAACCCTTAGGCTACATCCACCTGTACCACTTCTCTTACCTTATATTGCATCAAATGATGTTGAAATCAATGGTTACACAATTCATAAAGGAAACCAAGTCTTGATAAATGCATGGTCTATTGGAAGAAACCCTGAGTTTTGGGATGATCCATTGTTGTTTCGGCCTGAAAGGTTTCTCGATTCCAAGGCTGATTTTAAAGGGAGAGATTTCGAGTATTTACCTTTTGGTGCTGGAAGGAGAATTTGTCCTGGTATTCCATTGGCTAATAGGATGATTGTTTTAATGTTGGCCGCGTTGTTACATTCTTTTGAATGGGAGCTTCCTCAAGGTGTTACTCCAGAAATGCTTGATATGAGGGAGCAATATGGAATCACCTTGAAGAAACTTGTTCCTCTTTCTGCTGTTCCAATTTCAGTAGTATAG 1485 0.4215 MEIHFFLLFATLSLIIIRFFLNRKRNKPPGPTGLPIIGNLHQLGSEPHCSLSSLAKTYGPIMSLRFGSVTVTVASSPTTAQEILQKNDQSFANRPIPESVAAQPNVNDTLAWAPADSRWRNRRRICTTQIFTSQRLDLLQHLRHRKVEQLVQHLHKKAAEKTTVDIGELAFATMLNLVSNTVFSEDLVDSEFESAGEFKELVWRIMEDAGKVNVSDYFPVLKRFDLQGVKRHVKISYVRLHEIFDRMIKKRVEDRENLSGDGGGDFLDVLLDHCQQDKDSVFSVESIKPLILDLFIAGSDTSGSTTEWAMAELLRNPKIMKKARNEVIQVIGKSNQVKESDIPTLPYIQSIVKETLRLHPPVPLLLPYIASNDVEINGYTIHKGNQVLINAWSIGRNPEFWDDPLLFRPERFLDSKADFKGRDFEYLPFGAGRRICPGIPLANRMIVLMLAALLHSFEWELPQGVTPEMLDMREQYGITLKKLVPLSAVPISVV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04939 494 SUPERFAMILY Cytochrome P450 20 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 Gene3D Cytochrome P450 18 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 6 492 - -
Trre2g04939 494 FunFam Cytochrome P450 76C4 20 489 - -
Trre2g04939 494 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 PRINTS P450 superfamily signature 427 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 PRINTS P450 superfamily signature 350 361 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 CDD CYP76-like 55 490 - -
Trre2g04939 494 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 429 438 IPR017972 GO:0005506|GO:0016705
Trre2g04939 494 Pfam Cytochrome P450 28 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 PRINTS E-class P450 group I signature 55 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 PRINTS E-class P450 group I signature 306 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 PRINTS E-class P450 group I signature 349 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 PRINTS E-class P450 group I signature 173 191 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 PRINTS E-class P450 group I signature 390 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 PRINTS E-class P450 group I signature 426 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 PRINTS E-class P450 group I signature 79 100 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04939 494 PRINTS E-class P450 group I signature 436 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04939 Trre-Chr2 56980211 56982801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04939 5 491 Cytochrome P450 AT2G45550 43.976 2.21e-147 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04939 - - vra:106769993 748.429