Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04936 ATGGAAAATATCCCAACATTGATTTACAAAAACCCAATTAGAAGAACCTCAAGAAGATCAACAATGTATCTTGGTGTAAGAAAAAGACCATGGGGAAAATATGCAGCTGAAATTAGGAATCCATATACCAAAGACAGGCATTGGTTAGGTACATTTGACACTGCTGAAGAAGCTGCAATAGCATATGATTTTTCATCTATTAAAATTTGTGGCATTGATAATGCTAGAACTAATTTTCATTACCCTTTTGTATCTCATTCACAATTATTACTTCCTGCACCTCCACAACCTACCCCAGTGTTAGATGCAATTAGTATCCCAGAGATGAATGTTGGTTTTGATGGTGATGATGAATCTCTTGTTATTGCTTCTATCTTGCAAACTTTTTCTAATTCTGGTAGTTATTCTTTATAA 414 0.3406 MENIPTLIYKNPIRRTSRRSTMYLGVRKRPWGKYAAEIRNPYTKDRHWLGTFDTAEEAAIAYDFSSIKICGIDNARTNFHYPFVSHSQLLLPAPPQPTPVLDAISIPEMNVGFDGDDESLVIASILQTFSNSGSYSL 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04936 137 Pfam AP2 domain 24 63 IPR001471 GO:0003700|GO:0006355
Trre2g04936 137 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 94 - -
Trre2g04936 137 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Trre2g04936 137 CDD AP2 23 79 IPR001471 GO:0003700|GO:0006355
Trre2g04936 137 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Trre2g04936 137 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Trre2g04936 137 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Trre2g04936 137 SMART rav1_2 22 86 IPR001471 GO:0003700|GO:0006355
Trre2g04936 137 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04936 Trre-Chr2 56963502 56963915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04936 23 81 AP2-EREBP Transcription Factor Family AT1G12890 72.881 3.15e-25 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre2g04936 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04936 - - gmx:100816937 206.068