Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04929 ATGGAGAGAAAGTTCTGTGCTTTGGTTTTCATTTGGGCTTTTTTGTTTTTGTTGCTTCATCCACTATGGTTGGTTTCTGCTAACATGGAAGGTGATGCTTTACATAACTTGAGGACAAATTTACAAGATCCTAACAATGTTCTGCAGAGTTGGGATCCTACACTTGTTAATCCTTGTACATGGTTTCATGTAACCTGCAACAATGATAATAGTGTCATTAGAGTTGATCTCGGAAATGCTGCTTTGTCTGGTACACTTGTTCCACAGCTTGGTCAACTCAAGAATTTGCAGTATCTGGAACTGTACAGCAATAACATCACTGGTCCTATTCCAAGTGACTTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACTTAAATCGGTTCACTGGCCCTATTCCGGATTCATTGGGCAAGTTGTCAAAATTGCGATTCCTCCGGCTAAATAACAACAGCTTGATGGGTCCTATTCCAATGTCACTGACTAATATTTCAGCTCTCCAAGTTCTGGATTTGTCGAATAACCAGCTCTCAGGTGTGGTTCCAGATAATGGCTCCTTCTCATTATTTACTCCGATCAGTTTTGCAAACAACTTGAATCTGTGTGGACCAGTCACTGGGCACCCTTGTCCAGGCTCTCCTCCGTTTTCTCCGCCTCCCCCTTTTGTCCCACCACCACCAATTTCTGCCCCAGGAAGTGGCAGTGCAACTGGAGCAATAGCCGGAGGAGTTGCTGGCGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCGCAAGAATTTTTCTTTGATGTTCCTGCTGAAGAGGATCCTGAAGTTCATCTTGGGCAGCTTAAGAGATTCTCACTAAGAGAGTTGCAAGTCGCAACAGATACTTTCAGCAATAAGAACATTCTTGGAAGAGGAGGGTTTGGTAAGGTGTACAAAGGAAGATTGGCAGACGGCTCACTGGTTGCTGTCAAAAGATTGAAAGAGGAGCGGACACCGGGTGGGGAGCTTCAGTTTCAGACTGAAGTTGAGATGATCAGCATGGCTGTTCATAGAAATCTCCTCCGTTTACGTGGGTTTTGTATGACTCCAACAGAAAGGTTACTTGTTTATCCGTACATGGCTAATGGAAGTGTTGCCTCCTGTTTAAGAGAGCGCCCTCCACATCAGCAACCACTAGATTGGCCAACAAGGAAAAGAATAGCTTTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCAAAGATCATTCATCGGGACGTGAAAGCTGCTAACATATTGTTGGATGAAGAGTTTGAGGCTGTTGTTGGGGATTTTGGATTGGCAAAACTTATGGATTACAAGGACACCCATGTGACAACTGCTGTTCGGGGTACAATCGGGCATATAGCTCCCGAGTACCTATCTACCGGAAAATCTTCAGAGAAAACTGATGTTTTTGGTTATGGTATCATGCTTCTCGAGCTTATCACTGGACAAAGAGCTTTTGACCTTGCTCGGCTTGCCAATGATGATGATGTTATGCTGCTTGATTGGGTAAAAGGACTTCTGAAAGAGAAAAAGCTTGAAATGTTGGTTGATCCTGATCTTCAAACCAACTACATAGAAGCCGAGGTAGAACAGTTAATCCAGGTTGCACTACTCTGCACACAAGGTTCACCTATGGACCGGCCAAAGATGTCGGAAGTGGTGAGAATGCTTGAAGGCGATGGTTTGGCAGAAAGATGGGACGAGTGGCAAAAGGGAGAAGTTCTACGCCAGGAAGTGGAACTCGCCCCTCATCCTAATTCCGATTGGATTGTTGACTCTACCGAAAATCTACATGCAGTTGAATTATCTGGTCCAAGGTGA 1881 0.4466 MERKFCALVFIWAFLFLLLHPLWLVSANMEGDALHNLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNRFTGPIPDSLGKLSKLRFLRLNNNSLMGPIPMSLTNISALQVLDLSNNQLSGVVPDNGSFSLFTPISFANNLNLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPGSGSATGAIAGGVAGGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPHQQPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKGEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04929 626 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Trre2g04929 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 588 - -
Trre2g04929 626 Pfam Protein kinase domain 304 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04929 626 FunFam Somatic embryogenesis receptor-like kinase 1 380 597 - -
Trre2g04929 626 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Trre2g04929 626 FunFam Somatic embryogenesis receptor kinase 1 26 213 - -
Trre2g04929 626 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Trre2g04929 626 Gene3D Ribonuclease Inhibitor 26 213 IPR032675 -
Trre2g04929 626 Gene3D Transferase(Phosphotransferase) domain 1 380 597 - -
Trre2g04929 626 SUPERFAMILY L domain-like 31 199 - -
Trre2g04929 626 SMART serkin_6 303 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04929 626 CDD STK_BAK1_like 309 580 - -
Trre2g04929 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Trre2g04929 626 SUPERFAMILY Protein kinase-like (PK-like) 282 578 IPR011009 -
Trre2g04929 626 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Trre2g04929 626 ProSiteProfiles Protein kinase domain profile. 303 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04929 Trre-Chr2 56913738 56917273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04929 1 626 Receptor kinase-like Gene Family AT1G71830 88.339 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre2g04929 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04929 K13418 - gmx:100789884 1107.43