Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04919 ATGGCCGGCAATCCCGCAACCCCTTCCTCCACCTCTTCACTCCACAATTCAACTTTCTCTCCCGATTTCCCCTCCCGAATTCCCCTTACTTCCGATCAGGTTAACCACTGCACCAAAGCACTCGCTCTGTTGAAGGATAAGCTCCTTAACCCTAACACCATCTCCCAAGAGTTTCTTCACTTGCAGTATAATAGGATAACTCTCAGTGAGACCACGAGACGATGCAACGTTGCTCTTAATTCTGTTAATATTGGCAAAAATCGATATAAAGACGTTATACCATTTGACAAGAACAGGGTCATTCTTAATTCGAGTTCAGATTATAGGTCTGAGGCACTGGGGTATATCAATGCAAGCTTTATCTCGACCTCTTCCACCGGAACTGTGTCTGACTTTATAGCCACGCAAGGTCCGCTGCCACACACATATGAGGATTTCTGGGAAATGATTATCCAATATCACTGCCCTGCAATTGTGATGCTTACTAGGTTGGTCGACAATTACAAGACGGTGAAGTGTGGAGATTATTTTCAATCGGAGGATAGACCTAGAGAATTTGGTAATATCTCGCTTACATGTAAATGGACAAAAACTACTGAAACTTCACTTGTGCTGCGTCATTTGGAGGTGAACCGTAAAGAGGTAGAAGATACACCATTATCTGTTTTGCATATTCAGTATCCCGAGTGGCCTGACCATGGAGTTCCAAATGATACTTTAGCTGTGCGTGAAATTTTGAAAAGATTGTACCATTTACCACCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATCGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTGTAGATATTGCTAACACAGTATCTGTGTTCAGGTCCCAGCGTATTGGAATGGTTCAGACCCAGGATCAATACGTTTATTGCTATGAAGCTATCATAGATGAACTGGAAGACCTTGTATCTCAACAGTAG 999 0.4314 MAGNPATPSSTSSLHNSTFSPDFPSRIPLTSDQVNHCTKALALLKDKLLNPNTISQEFLHLQYNRITLSETTRRCNVALNSVNIGKNRYKDVIPFDKNRVILNSSSDYRSEALGYINASFISTSSTGTVSDFIATQGPLPHTYEDFWEMIIQYHCPAIVMLTRLVDNYKTVKCGDYFQSEDRPREFGNISLTCKWTKTTETSLVLRHLEVNRKEVEDTPLSVLHIQYPEWPDHGVPNDTLAVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSAVDIANTVSVFRSQRIGMVQTQDQYVYCYEAIIDELEDLVSQQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04919 332 CDD PTPc_plant_PTP1 115 319 - -
Trre2g04919 332 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 53 326 - -
Trre2g04919 332 ProSiteProfiles PTP type protein phosphatase domain profile. 54 324 IPR000242 GO:0004725|GO:0006470
Trre2g04919 332 Gene3D Protein tyrosine phosphatase superfamily 29 326 IPR029021 -
Trre2g04919 332 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 22 326 IPR029021 -
Trre2g04919 332 SMART PTPc_3 53 326 IPR000242 GO:0004725|GO:0006470
Trre2g04919 332 PRINTS Protein tyrosine phosphatase signature 114 121 IPR000242 GO:0004725|GO:0006470
Trre2g04919 332 PRINTS Protein tyrosine phosphatase signature 307 317 IPR000242 GO:0004725|GO:0006470
Trre2g04919 332 PRINTS Protein tyrosine phosphatase signature 132 152 IPR000242 GO:0004725|GO:0006470
Trre2g04919 332 PRINTS Protein tyrosine phosphatase signature 291 306 IPR000242 GO:0004725|GO:0006470
Trre2g04919 332 PRINTS Protein tyrosine phosphatase signature 220 237 IPR000242 GO:0004725|GO:0006470
Trre2g04919 332 PRINTS Protein tyrosine phosphatase signature 258 276 IPR000242 GO:0004725|GO:0006470
Trre2g04919 332 ProSitePatterns Tyrosine specific protein phosphatases active site. 261 271 IPR016130 GO:0016311|GO:0016791
Trre2g04919 332 Pfam Protein-tyrosine phosphatase 83 322 IPR000242 GO:0004725|GO:0006470
Trre2g04919 332 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 243 315 IPR000387 GO:0016311|GO:0016791
Trre2g04919 332 SMART ptp_7 221 323 IPR003595 -
Trre2g04919 332 FunFam Tyrosine-protein phosphatase non-receptor type 12 31 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04919 Trre-Chr2 56815463 56820277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04919 32 330 Protein tyrosine phosphatase (PTP) family AT1G71860 71.237 1.92e-166 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04919 - - gmx:548044 532.717