Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04911 ATGGGTATCTCCAATCTTCGCTTATTTTTCTTCTCTCTGCTGAGTTTCTCTGCTATAGCGGCTGCTAAGGTCGTGCTGATTGGGAACAACACTCTTTCATTCGATGATATTGAAGCTAATTTCTCTCCGTCAGTTAAAGGGTCTGGAGAATATGGAGCCTTATTCTTGGCCGAGCCGCTTGATGCATGTACAGAACTTACAAATAAAGCTATACAACTTCCGAATGATAGTTCACCTTTTGTTTTGATGATTAGAGGAGGGTGTAGCTTTGAGGACAAGGTTAGGATGGCACAAAATGCTGGCTACAAAGCTGCAATTGTCTATGACAATGAAGATGGTGGCATCCTGGTTGCAATGGCAGGAAATTCTGCTGGTATTAGAATACATGCGGTATTTGTATCAAAAGCTTCGGGTGAAATACTAATGAAATACACTGGTTTGACTAATGTGGAAACATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCGATTTCATTTATTTCCCTGCTAGCTATGTCTGCAGTGTTGGCCACTTGTTTTTTCGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCTCGAGGCTCTTCTCATGTTCGTGAATTTCATGGTATGAGCAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATTTTTACTTCTGCTTTGGAAGATAACTGTACATCAAGAACATGTGCTATCTGCCTTGAAGACTACTGCGTTGGAGAGAAACTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACTTCGTGGAGAACCTTTTGCCCAGTTTGCAAGCGTGATGCAAGAACTGGTCTGTCTGATCCACCGCCTTCAGAATCCACACCTCTGCTGTCATCGACGCCGTCATCTGTGGCATCTTCTTTCGTGTCTTCTATGAGGTCATCATTTGCTTCTTCTTCTGCAATACAAATTGCTTCACAGTCGCCATCTGCTTCTAGAAACCACTCTGTAGCTAGTACCCCTTACATGCAACCATCTCTAAGGTCCTACCGCCAGTCCCCCTCCCTAAGCGTCAGCCGTAGCTCCGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCACACATGAATTCACCGCGTTCCATCGGTTATCCATCTTTGTCATCTCTTAACTCAAGGTACATGTCTTCACACATTCCAAGTCCAAGCAATGGTTCAATTAGTTTTCTCGGTTCATCCAGTCATCAGCAACATCCACTCCGTTATAGCGAGTCAGCCTCAAGCTTCTCGCCATTTGCGTCTGCCAACTCCCTTCCGGATTGTTGA 1323 0.4482 MGISNLRLFFFSLLSFSAIAAAKVVLIGNNTLSFDDIEANFSPSVKGSGEYGALFLAEPLDACTELTNKAIQLPNDSSPFVLMIRGGCSFEDKVRMAQNAGYKAAIVYDNEDGGILVAMAGNSAGIRIHAVFVSKASGEILMKYTGLTNVETWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRGSSHVREFHGMSSRLVKAMPSLIFTSALEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLSDPPPSESTPLLSSTPSSVASSFVSSMRSSFASSSAIQIASQSPSASRNHSVASTPYMQPSLRSYRQSPSLSVSRSSVDLRNASQRSLASHMNSPRSIGYPSLSSLNSRYMSSHIPSPSNGSISFLGSSSHQQHPLRYSESASSFSPFASANSLPDC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04911 440 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 193 281 - -
Trre2g04911 440 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 157 291 - -
Trre2g04911 440 MobiDBLite consensus disorder prediction 419 440 - -
Trre2g04911 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 281 IPR013083 -
Trre2g04911 440 Pfam PA domain 80 141 IPR003137 -
Trre2g04911 440 CDD PA_C_RZF_like 19 162 IPR044744 -
Trre2g04911 440 SUPERFAMILY RING/U-box 223 288 - -
Trre2g04911 440 MobiDBLite consensus disorder prediction 325 381 - -
Trre2g04911 440 SUPERFAMILY PA domain 80 144 IPR046450 -
Trre2g04911 440 SMART ring_2 234 275 IPR001841 -
Trre2g04911 440 Pfam Ring finger domain 233 276 IPR001841 -
Trre2g04911 440 ProSiteProfiles Zinc finger RING-type profile. 234 276 IPR001841 -
Trre2g04911 440 Gene3D - 18 152 - -
Trre2g04911 440 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 22 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04911 Trre-Chr2 56681518 56685069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04911 18 439 C3H Transcription Factor Family AT1G22670 48.712 1.79e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04911 K15692 - gmx:100791248 620.928