Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04910 ATGGCCGGCAATCCCGCAACCCCTTCCTCCACCTCTTCACTCCACAGTTCAACTTTCTCTCCCGATTTCCCCTCCCGAATTCCCCTTACTTCCGATCAGGTTAACCGCTGCACCAAAGCACTCGCTCTGTTGAAGGATAAGCTCCTTAACCCTAACACCATCTCCCAAGAGTTCCTTCACTTGCAGTATAATAGGATAACTCTCAGTGAGACCACGAGAAGATGCAACGTTGCTCTTAATTCTGTTAATATTGGCAAAAATCGATATAAAGACGTTATACCATTTGACAAGAACAGGGTCATTCTTAATTCGAGTTCAGATTATAGGTCTGAGGCACTGGGGTATATCAATGCAAGCTTTATCTCGACCTCTTCCACCGGAACTGTGTCTGACTTTATAGCCACGCAAGGTCCGCTGCCACACACTTATGAGGATTTCTGGGAAATGATTATCCAATATCACTGCCCTGCAATTGTGATGCTTACTAGGTTGGTCGACAATTACAAGACGGTGAAGTGTGGAGATTATTTTCAATCGGAGGATAGACCTAGAGAATTTGGTAATATCTCGCTTACATGTAAATGGGCAAAAACTACTGAAACTTCACTTGTGCTGCGTCATTTGGAGGTGAACCATAAAGAGGTAGAAGATACACCATTATCTGTTTTGCATATTCAGTATCCTGAGTGGCCTGACCATGGAGTTCCAAATGATACTTTAGCTGTCCGTGAAATTTTGAAAAGATTGTACCATTTACCACCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATCGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTGTAGATATTGCTAACACAGTATCCGTGTTCAGGTCCCAGCGTATTGGAATGGTTCAGACCCAGGAAAGAGGTTTTGAAATCTACGAACAGGAATGA 966 0.4358 MAGNPATPSSTSSLHSSTFSPDFPSRIPLTSDQVNRCTKALALLKDKLLNPNTISQEFLHLQYNRITLSETTRRCNVALNSVNIGKNRYKDVIPFDKNRVILNSSSDYRSEALGYINASFISTSSTGTVSDFIATQGPLPHTYEDFWEMIIQYHCPAIVMLTRLVDNYKTVKCGDYFQSEDRPREFGNISLTCKWAKTTETSLVLRHLEVNHKEVEDTPLSVLHIQYPEWPDHGVPNDTLAVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSAVDIANTVSVFRSQRIGMVQTQERGFEIYEQE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04910 321 CDD PTPc_plant_PTP1 115 319 - -
Trre2g04910 321 MobiDBLite consensus disorder prediction 1 20 - -
Trre2g04910 321 Gene3D Protein tyrosine phosphatase superfamily 30 319 IPR029021 -
Trre2g04910 321 SMART ptp_7 221 321 IPR003595 -
Trre2g04910 321 PRINTS Protein tyrosine phosphatase signature 291 306 IPR000242 GO:0004725|GO:0006470
Trre2g04910 321 PRINTS Protein tyrosine phosphatase signature 258 276 IPR000242 GO:0004725|GO:0006470
Trre2g04910 321 PRINTS Protein tyrosine phosphatase signature 114 121 IPR000242 GO:0004725|GO:0006470
Trre2g04910 321 PRINTS Protein tyrosine phosphatase signature 307 317 IPR000242 GO:0004725|GO:0006470
Trre2g04910 321 PRINTS Protein tyrosine phosphatase signature 132 152 IPR000242 GO:0004725|GO:0006470
Trre2g04910 321 PRINTS Protein tyrosine phosphatase signature 220 237 IPR000242 GO:0004725|GO:0006470
Trre2g04910 321 SMART PTPc_3 53 320 IPR000242 GO:0004725|GO:0006470
Trre2g04910 321 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 243 315 IPR000387 GO:0016311|GO:0016791
Trre2g04910 321 ProSitePatterns Tyrosine specific protein phosphatases active site. 261 271 IPR016130 GO:0016311|GO:0016791
Trre2g04910 321 Pfam Protein-tyrosine phosphatase 83 312 IPR000242 GO:0004725|GO:0006470
Trre2g04910 321 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 23 313 IPR029021 -
Trre2g04910 321 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 53 313 - -
Trre2g04910 321 ProSiteProfiles PTP type protein phosphatase domain profile. 54 321 IPR000242 GO:0004725|GO:0006470
Trre2g04910 321 FunFam Tyrosine-protein phosphatase non-receptor type 12 31 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04910 Trre-Chr2 56645846 56648348 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04910 32 318 Protein tyrosine phosphatase (PTP) family AT1G71860 70.035 6.37e-155 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04910 - - gmx:548044 486.108