Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04901 ATGGATGATTATTTAATGCAATCTTACGAAAATGCAAAAAATAAAATCTTTTGGGATTTGGAAAATGCGTCAATTCCCAAGCAAGTCAGGAAGGACAAGTGCAACAGTTCTCAAATCCTTTCAAGGTTCAAATCAGCTTTAAGCTCGGCAAAGATGAATGGTCCTATTTCAATGGAAGTATTCAGTCAAACGGATACTATTCCCATTGGATTTGTGGACACACTTACTGCTAGTGCTAAATCAGTTCGTGTGACGTTGGTACCTCCCAGATTTATCAGAGTTCGAAATGAAGAGGAGAGACAAAAGGAGGTGGTCGACGCTGCAATAACAAACTCAGTCACACACTATATGAGGAAGGGATTTAAAAACCTCCCTCGAAATGTAATCCTTGTTACCGGTGACCAAGATTTTACAAAGCTGATAGCTCAACTAAAACGACATGGGTTTAACATCATTGTAGTTCTCACAGATCAATCGTTGAACACAGGGGCGTTCTTGGGGCAACATGCTGACATGATATGGACTTTTGATGACTTTAGAAAAGGAATGGAACCTATATTCAAAAAGCAAACCCAGGTTGAAAGATCAGAGCGACAGGCATTCGTTGGATCGGTTAGCAAATTGATGGGCATTGTGGACTCTCTTCATGAGGAGCGAATTGCGTGTTCAGAGCAGAACCTTAAGTTGCTTTTAATGGAAGATGACTTTAAAAAGATATTGAAATTGGCTGTTACTTTAGGCAAAATTGTTGAGGAAAAGGAAGAAGGTGTTTTAAATAAACTGAAGCAGGGAGCGTCTTTGTCTTTGGATGAAATTCTTGCAAATCAGCTGGCAAATCGAAACGAAGAGCTTACACGTTTTTATCGGTTGGCGTACACACACTCGTCTACGCTTAACGTCTTCACAACTCCTCGTGTCAATGATTTTCCCCGGAAGCTTTGGGAAGAAGTCGGCCATGCTATACTGAATAACGCTACCTTGCAAATAGAACTTAAACAATCGAAAAACCTTTATCTTGCCGCATCTGCACTTCGGAAGCATTGCAATTACATCAAGGACTATTATCTCAGTCACATAGTTTCTTTGATTCGTATCATGTTTGGTGAATTGGGTTGGTTGACATATCTGTTTGCTATTCGTGATGTCCGTATATCATTTATTGATGCTTTTTTTAAAAGCCTTGAACGCAAACGCAAACGCAAGCCTTCTGCAATGGCGTTTCCCAAAGTTAGCAGAACACCAAATTTTAAGCAGCTGGATAATAAAAATAAGACTTTCATTTGTTGGGATTTTGATAGTACACCTGCGCCGCCAGACCAAGCAATTTTTAAATATATTCCTGAAAAGATGGTTTGTGCAGTCAGAAACTGTAAATTGGAAGGTCCAGTGACTATAAAAGTATTTGCAAAGACGGAAGTATTCAATCCTTTTCGCAAAGTGTTGTCCAGGGCGGACATTGAAGTCACAGACATCAAATTTAAGCAGGGAAGGCAAAACGCAGTCAGCTCAAAGATACCCCATGATGTTGGCTTATTGTCAGTTGGTGACCTCTCTATTGCGAACTATATATTCATTACTGATAATGAATTTTACGCTGAAGTCATGCGGCGTCTTAAAAAGGAAGGCCATAAAATAATTCTAGTACAGTCAGAAATGATTGTGGCAGAACTGATTGAAATCGCTGATGATGAAACTATAGCAGCTGATGAGAGGTCAACCATTACTATGATGATAGCTCAGGTTATGAATGTCACCCATGCATTATGTAATAACAAGTCTCTCCCAACACGGGCAAATATTAGAAAAGAGTGTCCGGAAGGAAGGATTCAACGTCAAAGATATGTGGGTTTGGTTGAATTAAGGATGAAAATGATAAAGTAG 1881 0.395 MDDYLMQSYENAKNKIFWDLENASIPKQVRKDKCNSSQILSRFKSALSSAKMNGPISMEVFSQTDTIPIGFVDTLTASAKSVRVTLVPPRFIRVRNEEERQKEVVDAAITNSVTHYMRKGFKNLPRNVILVTGDQDFTKLIAQLKRHGFNIIVVLTDQSLNTGAFLGQHADMIWTFDDFRKGMEPIFKKQTQVERSERQAFVGSVSKLMGIVDSLHEERIACSEQNLKLLLMEDDFKKILKLAVTLGKIVEEKEEGVLNKLKQGASLSLDEILANQLANRNEELTRFYRLAYTHSSTLNVFTTPRVNDFPRKLWEEVGHAILNNATLQIELKQSKNLYLAASALRKHCNYIKDYYLSHIVSLIRIMFGELGWLTYLFAIRDVRISFIDAFFKSLERKRKRKPSAMAFPKVSRTPNFKQLDNKNKTFICWDFDSTPAPPDQAIFKYIPEKMVCAVRNCKLEGPVTIKVFAKTEVFNPFRKVLSRADIEVTDIKFKQGRQNAVSSKIPHDVGLLSVGDLSIANYIFITDNEFYAEVMRRLKKEGHKIILVQSEMIVAELIEIADDETIAADERSTITMMIAQVMNVTHALCNNKSLPTRANIRKECPEGRIQRQRYVGLVELRMKMIK 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04901 626 Gene3D - 6 178 - -
Trre2g04901 626 Pfam NYN domain 16 158 IPR021139 GO:0004540
Trre2g04901 626 Pfam NYN domain 425 564 IPR021139 GO:0004540
Trre2g04901 626 PANTHER LIMKAIN B LKAP 9 259 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04901 Trre-Chr2 56579221 56584751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04901 9 196 C2H2 Transcription Factor Family AT5G61190 25.131 7.39e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04901 - K17573 csat:104775140 55.0694