Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04896 ATGCTCAAGTTGTTGAGCAAGCGCCTGAAGAAGAAGCCTAAATCGAAAGAACCAATTGCTAAAGGGACTGAGGTTGGGAAAGGGAAAAAGGGTAAGGATCCGAACATGCTCAAGCGTCCTCCTGCTGCTTTCTTTATTTTCATGGATGATTTTAGAAAAACAGTTAAGGAAGCTAATTCTGATTCGAAGGATGTTAAAAGGGTTGGTAAAGAGGCTGGTGAGAAGTGA 228 0.4211 MLKLLSKRLKKKPKSKEPIAKGTEVGKGKKGKDPNMLKRPPAAFFIFMDDFRKTVKEANSDSKDVKRVGKEAGEK 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04896 75 MobiDBLite consensus disorder prediction 1 37 - -
Trre2g04896 75 MobiDBLite consensus disorder prediction 1 15 - -
Trre2g04896 75 Pfam HMG (high mobility group) box 38 75 IPR009071 -
Trre2g04896 75 MobiDBLite consensus disorder prediction 16 36 - -
Trre2g04896 75 Gene3D High mobility group box domain 20 75 IPR036910 -
Trre2g04896 75 SUPERFAMILY HMG-box 24 74 IPR036910 -
Trre2g04896 75 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 9 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04896 Trre-Chr2 56555032 56555545 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre2g04896 HMG_box 2.1e-06 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04896 K25507 - gmx:100306558 106.686