Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04893 ATGCTCGATGTTGAGTTGAAGCCTTATTTGCAAACAGTGGAGACATACTTGGCAAGACCATGGATGCCATTTTCAACGGCAGTGTTTCTGAACAACTACATTGATCATTTTGTTCAACGAGACGGATATATGATGTGGAACAAGACTCAACTTAACACAAAACAATTTTATTTTGTTGACTTTGGAAATATTGATCCCAGTGCCAATACTACAACATGGGTAAAATGGGCAAAATGCCTTATTAACAAGAAAATGGATGTTATATTCACGGCTGAACGATTCATTAAAGCTAGGACTTGGTTGTCTGCCACTGGCATTCCCTACGATCACGGCTTGGTTTTAACTTAA 348 0.3851 MLDVELKPYLQTVETYLARPWMPFSTAVFLNNYIDHFVQRDGYMMWNKTQLNTKQFYFVDFGNIDPSANTTTWVKWAKCLINKKMDVIFTAERFIKARTWLSATGIPYDHGLVLT 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04893 115 Pfam Pectinesterase 5 97 IPR000070 GO:0030599|GO:0042545
Trre2g04893 115 SUPERFAMILY Pectin lyase-like 10 111 IPR011050 -
Trre2g04893 115 Gene3D - 3 114 IPR012334 -
Trre2g04893 115 PANTHER PECTINESTERASE 11 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04893 Trre-Chr2 56512128 56512475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04893 3 113 Carbohydrate Esterase AT3G10720 35.714 8.75e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04893 K01051 - gmx:100808559 100.138