Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04890 ATGGGAATTTCTTCACAACCTTCTTTTGATGCACTCACTTTGAAAGATGTTCTTCAAGGAAGTGATGAAGTAAACAACAATAATTCATCATATTTGTGGAGCAAAGTTTTGGATGAACAAGCCAAGAAAAAGGTGAAGAAATCAAGAAGAATTTTCATGAAAAGAAGGATTGGTTCTAGAAGAGGTTCATATGGAATTCAAAGACGTGTAAGAACATTGAAGAGACTTATACCAAATAGTGATCAATCTATTGGGTTAGATGGACTTTTTAGAGAGACAGCTAATTATATATTGTCTTTGGAAAATAGAGTGAGAGTTATGAAGGTTATGGTTGAGGTATTGAATGGAAGTGATTAA 357 0.3305 MGISSQPSFDALTLKDVLQGSDEVNNNNSSYLWSKVLDEQAKKKVKKSRRIFMKRRIGSRRGSYGIQRRVRTLKRLIPNSDQSIGLDGLFRETANYILSLENRVRVMKVMVEVLNGSD 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04890 118 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 30 114 IPR044660 GO:0006355
Trre2g04890 118 CDD bHLH_AtIBH1_like 55 111 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04890 Trre-Chr2 56471440 56471796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04890 58 118 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G47270 57.377 2.26e-20 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04890 - - ccaj:109814433 137.117