Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04886 ATGGATATGGAATCATGTGTACCTCCAGGATTTAGATTTCATCCAACAGAAGAGGAACTTGTAGGGTATTATCTCAACAGGAAGATTAACTCACTCAAAATTGATCTAGATGTTATTGTTGAGGTTGATCTCTACAAAATTGAACCATGGGATATACAAGATAGATGCAAATTAGGATATGAGCAACAAAATGAGTGGTACTTTTTCAGTCACAAAGATAAAAAGTATCCAACAGGAACAAGAACTAACAGAGCCACTGCTGCTGGATTCTGGAAAGCTACTGGAAGAGATAAAGCTGTGACTTCCAAAAACAGAATTATAGGAATGAGGAAGACTCTTGTTTTTTATAAGGGACGTGCCCCTAATGGAAGGAAAACTGATTGGATTATGCATGAATATAGACATCAAACTTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGCAGAGCATTTAAGAAGCCAAGTCCAAGTCATAGGCCAGGTTATGAACCATGGTATAGCAATAGTAATCAACATCAACAACCACAATATTTTGGAGATGATCAAAGCTATGCAACTACAAGACCATTATCAATCACAGATATTTTGCATGAAAATCGTTTACTCCTTCATAATCATCCTGCAACTGAAGAAGGTACAAGTTTTGGTCACCACTTTAACAATGATCAACAATTTCTATCAAACCAAACTACTGTTGTTATGGACAACAAACAACTCATTGAACTTCCACAGTTAGATAGTCCAACAACAAGTTTTGCTATCAAAGAATCTACTCAAAATGGATTCATCACAAATGAAGATCAATGCAGTGATGAAAGAAGCAACAATGGATCACAAGTAATTGATTGGAAAAGTTTGGATAACTTGTTCACTTCACATCAATATACAGATACAACTAATTACTTTACAAATCCATTGATGATGATGCCTCATAATCAACATGAGCTACAATCACAAAATCAAGCTAATCATATATTAGGATGCTTTCCAGATTCATAA 1008 0.3571 MDMESCVPPGFRFHPTEEELVGYYLNRKINSLKIDLDVIVEVDLYKIEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFKKPSPSHRPGYEPWYSNSNQHQQPQYFGDDQSYATTRPLSITDILHENRLLLHNHPATEEGTSFGHHFNNDQQFLSNQTTVVMDNKQLIELPQLDSPTTSFAIKESTQNGFITNEDQCSDERSNNGSQVIDWKSLDNLFTSHQYTDTTNYFTNPLMMMPHNQHELQSQNQANHILGCFPDS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04886 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 251 - -
Trre2g04886 335 Pfam No apical meristem (NAM) protein 8 134 IPR003441 GO:0003677|GO:0006355
Trre2g04886 335 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Trre2g04886 335 FunFam NAC domain-containing protein 16 160 - -
Trre2g04886 335 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Trre2g04886 335 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04886 Trre-Chr2 56443834 56445508 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04886 3 335 NAC Transcription Factor Family AT1G71930 52.907 9.98e-118 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre2g04886 NAM 5.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04886 - - gmx:100812904 494.582